##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935513.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 390606 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.175435093162932 31.0 31.0 33.0 28.0 34.0 2 31.15634680470858 31.0 31.0 34.0 28.0 34.0 3 30.968920088273094 31.0 31.0 34.0 27.0 34.0 4 34.79376916893238 35.0 35.0 37.0 32.0 37.0 5 34.81898639549828 35.0 35.0 37.0 33.0 37.0 6 35.01407556463546 36.0 35.0 37.0 32.0 37.0 7 35.47070705519116 37.0 35.0 37.0 33.0 37.0 8 35.25565403501226 37.0 35.0 37.0 32.0 37.0 9 37.16806961490607 39.0 37.0 39.0 34.0 39.0 10 36.40866755759 38.0 35.0 39.0 32.0 39.0 11 36.699584747802135 39.0 35.0 39.0 32.0 39.0 12 36.85658182413992 39.0 37.0 39.0 33.0 39.0 13 36.92966313881507 39.0 37.0 39.0 33.0 39.0 14 37.97622156341684 40.0 37.0 41.0 33.0 41.0 15 38.17340235429051 40.0 37.0 41.0 33.0 41.0 16 38.12330583759594 40.0 37.0 41.0 34.0 41.0 17 38.039794575608155 40.0 37.0 41.0 33.0 41.0 18 38.015332585776974 39.0 37.0 41.0 34.0 41.0 19 37.88333256529597 39.0 37.0 41.0 34.0 41.0 20 37.94548726850074 39.0 37.0 41.0 34.0 41.0 21 37.88953830714326 39.0 36.0 41.0 33.0 41.0 22 38.02992529556638 40.0 37.0 41.0 34.0 41.0 23 38.05649170775666 40.0 37.0 41.0 34.0 41.0 24 38.04243150386835 40.0 37.0 41.0 34.0 41.0 25 37.62100684577298 39.0 36.0 41.0 33.0 41.0 26 37.75074115604983 40.0 36.0 41.0 33.0 41.0 27 37.81619073951757 40.0 36.0 41.0 33.0 41.0 28 37.72041648105764 40.0 36.0 41.0 33.0 41.0 29 37.68837396250954 40.0 36.0 41.0 33.0 41.0 30 37.42266119824068 40.0 36.0 41.0 33.0 41.0 31 37.406632258593056 39.0 36.0 41.0 33.0 41.0 32 37.39355770264665 40.0 36.0 41.0 33.0 41.0 33 37.34338438221635 40.0 36.0 41.0 33.0 41.0 34 37.248193832148 40.0 36.0 41.0 32.0 41.0 35 37.277502137703976 40.0 36.0 41.0 32.0 41.0 36 37.12595300635423 40.0 36.0 41.0 32.0 41.0 37 37.14810320373983 40.0 36.0 41.0 32.0 41.0 38 36.958597666190485 40.0 35.0 41.0 31.0 41.0 39 36.8605884190207 39.0 35.0 41.0 31.0 41.0 40 36.75771237512993 39.0 35.0 41.0 31.0 41.0 41 36.63298054817386 39.0 35.0 41.0 30.0 41.0 42 36.65842818594697 39.0 35.0 41.0 31.0 41.0 43 36.63256324787638 39.0 35.0 41.0 31.0 41.0 44 36.636444396655456 39.0 35.0 41.0 31.0 41.0 45 36.61579955249023 39.0 35.0 41.0 31.0 41.0 46 36.456224430756315 39.0 35.0 41.0 30.0 41.0 47 36.44547190775359 39.0 35.0 41.0 30.0 41.0 48 36.381366389661196 39.0 35.0 41.0 30.0 41.0 49 36.36050393491139 39.0 35.0 41.0 30.0 41.0 50 36.24020624363169 39.0 35.0 41.0 30.0 41.0 51 34.98207656820428 38.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 10.0 9 25.0 10 31.0 11 16.0 12 7.0 13 12.0 14 8.0 15 19.0 16 41.0 17 62.0 18 101.0 19 181.0 20 388.0 21 619.0 22 984.0 23 1378.0 24 2038.0 25 2847.0 26 3589.0 27 3998.0 28 4338.0 29 4841.0 30 5777.0 31 7480.0 32 10101.0 33 14177.0 34 24236.0 35 28456.0 36 31440.0 37 48965.0 38 88707.0 39 105716.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 42.18445185173807 20.26543371069569 24.885690439983 12.664423997583244 2 32.687925940717754 25.31220718575751 25.058754857836284 16.941112015688443 3 31.587584420106197 24.15451887579812 28.640113055098997 15.617783648996685 4 27.746117571158663 26.130935008678826 27.41253334562193 18.710414074540584 5 25.232331300594463 29.726117878373604 26.23846023870601 18.803090582325925 6 23.865224804534492 35.80462153679155 25.65705595920186 14.673097699472102 7 77.94401519689917 5.8813740700347665 11.77836489966872 4.396245833397336 8 79.12013640343466 6.441529315985929 9.485005350660256 4.953328929919151 9 73.11357224415396 7.645043854933103 12.1385744202598 7.102809480653138 10 36.019159971941036 31.83002821257226 18.582919873222632 13.56789194226407 11 26.415108830893537 25.660128108631202 28.684147196919657 19.240615863555604 12 23.850888107197534 23.238762333399894 32.331812619365806 20.578536940036763 13 23.407986564466494 24.52445686958214 33.92139393660108 18.14616262935029 14 19.087264404540637 29.363860258162955 31.117033532511023 20.431841804785385 15 18.19787714474432 26.5062492639642 35.93313978791928 19.362733803372194 16 21.398800837672745 26.51879387413404 31.09143228726645 20.990973000926765 17 20.87679144713599 25.552858891056463 30.298817734494605 23.271531927312942 18 22.065713276293756 25.525465558644772 31.791882357157853 20.61693880790362 19 22.27461943748944 27.125799398882762 29.183115466736304 21.416465696891496 20 22.735185839439232 27.428918142578457 30.30086583411417 19.535030183868145 21 22.88341704940528 27.450679201036337 30.768344572279993 18.897559177278385 22 21.289483520478434 25.217994603257505 29.861036440812484 23.63148543545158 23 19.97434755226494 26.74485286964358 30.43527237164816 22.84552720644332 24 20.913913252740613 25.84676118646411 30.877149864569414 22.362175696225865 25 19.47947548168743 28.73586171231369 29.035908306580033 22.74875449941885 26 19.34097274491431 28.210012134990247 29.349267548373554 23.09974757172189 27 20.82917313098109 26.875419220390878 29.653154329426584 22.642253319201448 28 18.506884174846263 28.339298423475316 30.50081155947425 22.653005842204166 29 20.15304424407203 27.409205183740138 29.62985719625403 22.807893375933805 30 20.889336057305826 28.30064054315602 28.264798799813622 22.54522459972453 31 21.054464089133297 28.728693363645206 26.554635617476436 23.662206929745064 32 22.210104299473127 29.579678755574673 26.821144580472396 21.38907236447981 33 21.19091872628685 27.45835957460971 26.764053803577003 24.58666789552644 34 20.016845619370926 28.13141631208942 27.450935213488787 24.40080285505087 35 19.916744750464662 26.89026794263273 28.465256550078593 24.727730756824013 36 20.260825486551663 29.377172905690134 26.354433879663908 24.007567728094294 37 19.823300205321985 28.34288259780956 28.206427960656004 23.627389236212448 38 20.448482614194354 29.317522004270284 27.143720270553963 23.0902751109814 39 22.11896386640246 26.55591567973866 26.90153249054034 24.423587963318536 40 20.927993937625125 26.001392707741307 29.66339482752441 23.40721852710916 41 18.595464483392472 26.12274261020056 28.317025340112544 26.964767566294423 42 19.42008059272003 26.837785389881365 28.92249479014659 24.819639227252015 43 20.64868435200688 25.73821190662714 28.708980404806887 24.90412333655909 44 20.70577512890227 26.830105016307993 27.05232382503085 25.411796029758886 45 20.7664500801319 25.60329334418826 27.50776997793173 26.12248659774811 46 21.755426183929586 27.036963077884106 27.609150909100215 23.59845982908609 47 19.060639109486285 25.724131221742624 30.916063757341156 24.29916591142993 48 19.739840145824694 25.665504370132563 29.101703506858573 25.49295197718417 49 21.018366333338452 23.970701934942117 30.98851528138329 24.022416450336145 50 20.131283185614148 24.741811441708524 29.807785850703777 25.319119521973548 51 19.61644214374587 24.008335765451633 28.661874113556884 27.71334797724561 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 350.0 1 438.5 2 527.0 3 2108.0 4 3689.0 5 2508.5 6 1328.0 7 1424.5 8 1521.0 9 1348.0 10 1175.0 11 1195.0 12 1215.0 13 1190.5 14 1166.0 15 1152.5 16 1139.0 17 1084.0 18 1029.0 19 1095.0 20 1161.0 21 1210.5 22 1260.0 23 1565.5 24 1871.0 25 2215.5 26 2896.0 27 3232.0 28 3915.5 29 4599.0 30 5699.0 31 6799.0 32 7686.0 33 8573.0 34 9978.5 35 11384.0 36 12729.5 37 14075.0 38 15062.0 39 16049.0 40 17175.0 41 18301.0 42 21031.5 43 23762.0 44 26056.0 45 28350.0 46 34566.5 47 40783.0 48 41752.5 49 42722.0 50 40456.0 51 38190.0 52 33046.5 53 27903.0 54 24304.0 55 20705.0 56 18438.0 57 16171.0 58 15172.0 59 14173.0 60 12334.5 61 10496.0 62 9355.0 63 8214.0 64 6843.0 65 5472.0 66 4522.0 67 3572.0 68 3058.5 69 2545.0 70 2165.0 71 1785.0 72 1476.5 73 1168.0 74 996.5 75 621.0 76 417.0 77 307.5 78 198.0 79 126.5 80 55.0 81 49.0 82 43.0 83 41.0 84 39.0 85 23.0 86 7.0 87 5.0 88 3.0 89 2.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 390606.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.69784333884902 #Duplication Level Percentage of deduplicated Percentage of total 1 73.53961460145374 29.193640996478443 2 9.628556249844292 7.6446583517122875 3 3.605003544761449 4.293325978678062 4 2.077056371161167 3.29818633713257 5 1.5334084523015097 3.0436504256966135 6 1.2955394166122545 3.085807247998628 7 0.989857119752464 2.7506635007444338 8 0.8887806439407814 2.822613981260999 9 0.7986679707613575 2.8534856384736735 >10 5.554831522009938 34.89258027565409 >50 0.05673174517570483 1.5322235898194838 >100 0.026735650025332163 2.059014433759786 >500 0.0019562670750243043 0.571833402586795 >1k 0.0032604451250405073 1.9583158400041216 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2161 0.5532429097351296 No Hit GAATCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTC 1610 0.41218004843755596 RNA PCR Primer, Index 40 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGC 1444 0.36968198133157193 Illumina PCR Primer Index 8 (95% over 23bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGC 1236 0.31643139122286906 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCG 1114 0.2851978720244953 No Hit CCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGC 870 0.22273083362774768 RNA PCR Primer, Index 40 (96% over 25bp) CTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTGCT 783 0.20045775026497287 RNA PCR Primer, Index 40 (96% over 26bp) CGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTTCTG 556 0.14234292355980196 RNA PCR Primer, Index 40 (95% over 24bp) GAATGCTGTCTCTTATACACATCTGACGCACAGACTCTCGTATGCCGTCTT 472 0.12083787755436425 RNA PCR Primer, Index 40 (95% over 21bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 467 0.11955781529213581 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.5601245244568694E-4 0.0 0.0 0.2119783106250288 0.0 2 5.120249048913739E-4 0.0 0.0 1.020721647900954 0.0 3 5.120249048913739E-4 0.0 0.0 1.4375099204825323 0.0 4 5.120249048913739E-4 0.0 0.0 2.015330025652448 0.0 5 7.680373573370608E-4 0.0 0.0 3.6681464186418027 0.0 6 7.680373573370608E-4 0.0 0.0 4.676323456372918 0.0 7 7.680373573370608E-4 0.0 0.0 5.544973707521134 0.0 8 7.680373573370608E-4 0.0 0.0 6.967122880856925 0.0 9 7.680373573370608E-4 0.0 0.0 7.4714674121749285 0.0 10 7.680373573370608E-4 0.0 0.0 8.838829920687342 0.0 11 7.680373573370608E-4 0.0 0.0 10.395641644009565 0.0 12 7.680373573370608E-4 0.0 0.0 11.945029006210863 0.0 13 7.680373573370608E-4 0.0 0.0 12.54409814493377 0.0 14 7.680373573370608E-4 0.0 0.0 12.817519444145763 0.0 15 7.680373573370608E-4 0.0 0.0 13.233027654465113 0.0 16 7.680373573370608E-4 0.0 0.0 13.998248874825272 0.0 17 7.680373573370608E-4 0.0 0.0 15.004889837841713 0.0 18 7.680373573370608E-4 0.0 0.0 15.998474165783424 0.0 19 7.680373573370608E-4 0.0 0.0 16.697132148507702 0.0 20 7.680373573370608E-4 0.0 0.0 17.274184216320283 0.0 21 7.680373573370608E-4 0.0 0.0 17.928808057223904 0.0 22 7.680373573370608E-4 0.0 0.0 18.686092891558246 0.0 23 7.680373573370608E-4 0.0 0.0 19.453106199085525 0.0 24 0.0010240498097827478 0.0 0.0 20.02094181861006 0.0 25 0.0010240498097827478 0.0 0.0 20.536038872930778 0.0 26 0.0010240498097827478 0.0 0.0 21.047295740464815 0.0 27 0.0010240498097827478 0.0 0.0 21.551128246877926 0.0 28 0.0010240498097827478 0.0 0.0 22.048816454432345 0.0 29 0.0010240498097827478 0.0 0.0 22.597195127571005 0.0 30 0.0010240498097827478 0.0 0.0 23.221097474181143 0.0 31 0.0010240498097827478 0.0 0.0 23.76205178619888 0.0 32 0.0010240498097827478 0.0 0.0 24.30940640952776 0.0 33 0.0010240498097827478 0.0 0.0 24.852152808712617 0.0 34 0.0010240498097827478 0.0 0.0 25.377746373583612 0.0 35 0.0010240498097827478 0.0 0.0 25.930733270866295 0.0 36 0.0010240498097827478 0.0 0.0 26.450694561783486 0.0 37 0.0010240498097827478 0.0 0.0 26.9752640768447 0.0 38 0.0010240498097827478 0.0 0.0 27.483448794949386 0.0 39 0.0012800622622284347 0.0 0.0 28.057684725785062 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCTTGCG 20 7.027563E-4 45.0 1 CGGTCTA 20 7.027563E-4 45.0 31 TAAGCGA 20 7.027563E-4 45.0 22 TCGACAA 20 7.027563E-4 45.0 19 TACAACG 20 7.027563E-4 45.0 1 AAGGGCG 75 0.0 42.0 5 CGTTTTT 1110 0.0 41.959457 1 CGAAAGG 55 6.002665E-11 40.909092 2 CCGATGA 110 0.0 40.909092 18 TGAACGG 55 6.002665E-11 40.909092 2 GTATTAG 45 1.9226718E-8 40.0 1 GTTTGCG 40 3.4504046E-7 39.375 1 GGCCGAT 80 0.0 39.375 8 ATGCTCG 40 3.4504046E-7 39.375 13 TCGTAGG 40 3.4504046E-7 39.375 2 CGTAAGG 40 3.4504046E-7 39.375 2 TGGGCGA 160 0.0 39.375 6 CGATGCA 35 6.237704E-6 38.571426 10 CGTTTGG 35 6.237704E-6 38.571426 2 CTGCGGG 160 0.0 37.96875 3 >>END_MODULE