##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935509.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 453763 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.200703891679137 31.0 31.0 33.0 28.0 34.0 2 31.21584174998843 31.0 31.0 34.0 28.0 34.0 3 30.951514336779333 31.0 30.0 34.0 27.0 34.0 4 34.792488589858586 35.0 35.0 37.0 32.0 37.0 5 34.83593417709245 35.0 35.0 37.0 33.0 37.0 6 35.03523425224181 36.0 35.0 37.0 32.0 37.0 7 35.4780072416658 37.0 35.0 37.0 33.0 37.0 8 35.3150411117698 37.0 35.0 37.0 33.0 37.0 9 37.20802489405262 39.0 37.0 39.0 34.0 39.0 10 36.485976159360725 38.0 35.0 39.0 32.0 39.0 11 36.70937251384533 39.0 35.0 39.0 32.0 39.0 12 36.7507046630069 39.0 35.0 39.0 33.0 39.0 13 36.778349050054764 39.0 35.0 39.0 33.0 39.0 14 37.68018547127024 40.0 37.0 41.0 33.0 41.0 15 37.90416142347437 40.0 37.0 41.0 33.0 41.0 16 37.88335761179294 40.0 37.0 41.0 33.0 41.0 17 37.840850840637074 39.0 36.0 41.0 33.0 41.0 18 37.786573607808485 39.0 36.0 41.0 33.0 41.0 19 37.61081886359179 39.0 36.0 41.0 33.0 41.0 20 37.65643518753182 39.0 36.0 41.0 33.0 41.0 21 37.5621789348184 39.0 35.0 41.0 33.0 41.0 22 37.71745162122077 39.0 35.0 41.0 33.0 41.0 23 37.77269191185707 39.0 35.0 41.0 33.0 41.0 24 37.756253815317685 40.0 35.0 41.0 33.0 41.0 25 37.35495181405271 39.0 35.0 41.0 33.0 41.0 26 37.4483684214006 39.0 35.0 41.0 33.0 41.0 27 37.50862454629399 39.0 35.0 41.0 33.0 41.0 28 37.39787069461371 39.0 35.0 41.0 33.0 41.0 29 37.33745148899315 39.0 35.0 41.0 33.0 41.0 30 37.03963963566884 39.0 35.0 41.0 32.0 41.0 31 36.97107961645176 39.0 35.0 41.0 32.0 41.0 32 36.89007036712998 39.0 35.0 41.0 31.0 41.0 33 36.807141613573606 39.0 35.0 41.0 31.0 41.0 34 36.62637103509982 39.0 35.0 41.0 31.0 41.0 35 36.544303964845085 39.0 35.0 41.0 31.0 41.0 36 36.367502418663484 39.0 35.0 41.0 30.0 41.0 37 36.353307784019414 39.0 35.0 41.0 30.0 41.0 38 36.19751720611861 39.0 35.0 41.0 30.0 41.0 39 36.13037202239936 39.0 35.0 41.0 30.0 41.0 40 36.025292939265654 39.0 35.0 41.0 29.0 41.0 41 35.78105530860824 38.0 35.0 40.0 28.0 41.0 42 35.80394170525142 38.0 35.0 40.0 29.0 41.0 43 35.83193429168971 38.0 35.0 40.0 29.0 41.0 44 35.834697848877056 38.0 35.0 40.0 29.0 41.0 45 35.82290755306184 38.0 35.0 40.0 29.0 41.0 46 35.70352364560354 38.0 35.0 40.0 29.0 41.0 47 35.640757399787994 38.0 35.0 40.0 28.0 41.0 48 35.545315506112225 38.0 35.0 40.0 28.0 41.0 49 35.50732871565112 38.0 35.0 40.0 28.0 41.0 50 35.39190722910418 38.0 35.0 40.0 28.0 41.0 51 34.079847850089145 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 4.0 8 16.0 9 31.0 10 31.0 11 19.0 12 25.0 13 21.0 14 25.0 15 31.0 16 66.0 17 97.0 18 193.0 19 320.0 20 589.0 21 934.0 22 1360.0 23 2034.0 24 2933.0 25 4231.0 26 5337.0 27 5892.0 28 6156.0 29 6841.0 30 8005.0 31 10022.0 32 13305.0 33 19505.0 34 33292.0 35 34512.0 36 38224.0 37 57508.0 38 97448.0 39 104740.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.43027527585986 21.331840630461276 24.4473436573718 14.79054043630706 2 35.78189495397377 23.151513014503166 24.16768224822209 16.898909783300976 3 30.87647075676069 24.18156614796711 28.198420761498845 16.743542333773355 4 27.295967278072474 24.561940925108484 28.852286325681025 19.289805471138017 5 24.464753626893334 29.285331770109064 27.348858324720172 18.901056278277427 6 24.498912427853305 32.70606021204902 27.423346548749016 15.371680811348657 7 76.00773972315945 6.71738330361885 11.979601686342871 5.295275286878833 8 77.64185268521231 5.012308187313642 12.256618543160196 5.089220584313838 9 72.36530964402121 7.436040399944464 13.235984423586764 6.962665532447556 10 40.54054649673949 22.457538406613146 21.135923378503758 15.865991718143613 11 30.351527118782272 24.081513918058544 26.047297818464703 19.519661144694478 12 26.876364974667393 20.55257920985184 32.116104662566144 20.454951152914628 13 25.128095503599894 22.46987965083094 32.9381196792158 19.46390516635336 14 21.33448518279366 24.267734478130652 34.218083008090126 20.179697330985558 15 19.78786282707052 24.425746479990657 35.54719093447461 20.23919975846422 16 24.034573114158714 23.58169352723779 32.13880373675245 20.244929621851053 17 24.565687374246025 24.19236473665768 29.14517049649266 22.096777392603627 18 25.035315792605388 23.706428245581947 30.559785614957587 20.69847034685508 19 24.413845994494924 25.966418592965933 27.970107743469608 21.649627669069535 20 24.077106330837907 26.531471274652183 29.74636539338818 19.645057001121728 21 23.39128575930607 26.32717960697545 31.23987632310259 19.041658310615894 22 22.32883685977041 23.215863787924533 31.45584809691403 22.99945125539103 23 21.09603471415695 25.506046107769915 30.596588968249943 22.80133020982319 24 22.438585781564385 24.764689937257998 30.337422839676222 22.4593014415014 25 23.411781039882055 25.88002988344136 27.639318322560456 23.068870754116137 26 21.372831191613244 25.01922809925005 29.24015400109749 24.36778670803922 27 22.29159274775599 24.52954515903677 30.16927338720874 23.009588705998507 28 20.951025094597842 24.414727511939052 30.231640746380823 24.402606647082287 29 22.718026811353063 24.60469452114871 29.74063553000135 22.936643137496887 30 25.047436657462157 22.7230955366568 30.228114676604307 22.001353129276737 31 24.49053801213409 23.84791179536454 28.848760255904516 22.812789936596857 32 25.439271161377196 23.676897411203647 29.280924182888423 21.602907244530737 33 25.146827749287624 23.72802542296309 28.581880849694663 22.54326597805462 34 23.73463680379405 23.338835471380435 30.245304266764812 22.681223458060707 35 23.7315514927396 24.839839299369935 30.071424950910497 21.357184256979966 36 25.1507945777862 25.694250082091312 28.210541626355607 20.94441371376688 37 22.945899070660232 26.285968666462452 29.016468949649926 21.75166331322739 38 23.243190828692512 26.087186482811514 28.349601003166853 22.320021685329124 39 24.63268269999978 24.244815024583318 27.641522116170776 23.480980159246126 40 25.63584955141781 22.233412596443518 30.49102725431558 21.639710597823093 41 22.463709028722043 24.36778670803922 28.993108737380524 24.175395525858214 42 22.32354775510564 24.77041980064483 30.2109250864438 22.69510735780573 43 22.430431745206196 23.735959079960246 30.130706999028128 23.70290217580543 44 22.631197343106425 22.918572029892257 29.806969717672 24.64326090932932 45 23.370349720008022 22.249059531076796 28.85162518759793 25.52896556131725 46 23.84703027792041 22.89256726529047 29.11189321297682 24.1485092438123 47 21.529741296668085 24.37836491736876 31.090679495683872 23.001214290279286 48 21.66681725923004 24.55554992363855 30.452681245496 23.324951571635413 49 23.68152537778532 23.02699867552004 30.364749880444197 22.926726066250446 50 21.63552338996348 22.61378737358489 30.92539497490981 24.82529426154182 51 21.750120657700165 22.69025901186302 28.859779223956117 26.699841106480697 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 196.0 1 402.5 2 609.0 3 3130.5 4 5652.0 5 3802.5 6 1953.0 7 2146.0 8 2339.0 9 2318.5 10 2298.0 11 2064.0 12 1830.0 13 1819.5 14 1809.0 15 1769.0 16 1729.0 17 1593.5 18 1458.0 19 1500.5 20 1543.0 21 1514.5 22 1486.0 23 1536.5 24 1587.0 25 1898.5 26 2600.0 27 2990.0 28 3699.5 29 4409.0 30 5000.5 31 5592.0 32 6498.0 33 7404.0 34 8340.5 35 9277.0 36 10473.5 37 11670.0 38 12920.5 39 14171.0 40 15659.0 41 17147.0 42 19334.0 43 21521.0 44 24489.5 45 27458.0 46 33205.0 47 38952.0 48 41884.5 49 44817.0 50 44721.0 51 44625.0 52 40230.0 53 35835.0 54 32491.5 55 29148.0 56 26732.5 57 24317.0 58 22841.5 59 21366.0 60 19331.0 61 17296.0 62 15651.0 63 14006.0 64 12212.0 65 10418.0 66 9271.5 67 8125.0 68 7095.5 69 6066.0 70 5027.5 71 3989.0 72 3321.0 73 2653.0 74 2156.0 75 1357.5 76 1056.0 77 831.0 78 606.0 79 438.0 80 270.0 81 190.5 82 111.0 83 80.5 84 50.0 85 36.5 86 23.0 87 24.5 88 26.0 89 17.0 90 8.0 91 5.0 92 2.0 93 1.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 453763.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.3213965008156 #Duplication Level Percentage of deduplicated Percentage of total 1 73.26097209816471 29.53984704005288 2 9.704333469887462 7.825845552309361 3 3.7560672002915627 4.543496245999934 4 2.244583114050276 3.6201890288262635 5 1.5979361636597718 3.221550881895891 6 1.2757064501353363 3.086295935673291 7 1.0359313086832456 2.9239137931518164 8 0.9241473192767977 2.981032838858047 9 0.7995260706470757 2.901420693656986 >10 5.324732289652035 33.61862184896417 >50 0.044095371334352935 1.1950294797252778 >100 0.02535483851725271 1.7897661149763056 >500 0.004960729275114661 1.5146226342435765 >1k 0.0016535764250382205 1.238367911666208 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3433 0.7565623464231328 No Hit CCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC 1133 0.24968981604934737 TruSeq Adapter, Index 21 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTG 1006 0.2217016371982731 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTC 999 0.22015898167104855 No Hit GCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGC 925 0.2038509089546746 TruSeq Adapter, Index 21 (95% over 22bp) CGTTTCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTT 867 0.1910689060148139 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGC 824 0.18159259349043444 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCG 814 0.17938879988011364 No Hit CGTTCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTC 779 0.1716755222439908 No Hit CTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCTGCT 564 0.12429395962209348 Illumina Paired End PCR Primer 2 (95% over 21bp) CGTCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCTTCT 525 0.11569916454184234 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGTCTGGTATCGTATGCCGTCT 518 0.11415650901461777 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.2037936103208063E-4 0.0 0.0 0.13178685789718422 0.0 2 2.2037936103208063E-4 0.0 0.0 0.729896443738251 0.0 3 2.2037936103208063E-4 0.0 0.0 1.1814537544929842 0.0 4 2.2037936103208063E-4 0.0 0.0 1.7063973924714002 0.0 5 4.4075872206416125E-4 0.0 0.0 3.1505433453146248 0.0 6 4.4075872206416125E-4 0.0 0.0 4.331997099807609 0.0 7 4.4075872206416125E-4 0.0 0.0 5.3655763030480665 0.0 8 4.4075872206416125E-4 0.0 0.0 6.739421239722057 0.0 9 4.4075872206416125E-4 0.0 0.0 7.402542737067588 0.0 10 4.4075872206416125E-4 0.0 0.0 8.644821195205427 0.0 11 4.4075872206416125E-4 0.0 0.0 10.135687572587452 0.0 12 4.4075872206416125E-4 0.0 0.0 11.393392585997535 0.0 13 4.4075872206416125E-4 0.0 0.0 11.96042868193308 0.0 14 4.4075872206416125E-4 0.0 0.0 12.233478710251827 0.0 15 4.4075872206416125E-4 0.0 0.0 12.587628343430382 0.0 16 6.611380830962418E-4 0.0 0.0 13.237086320391922 0.0 17 6.611380830962418E-4 0.0 0.0 13.959930624577147 0.0 18 6.611380830962418E-4 0.0 0.0 14.75572049726399 0.0 19 6.611380830962418E-4 0.0 0.0 15.281325273325503 0.0 20 6.611380830962418E-4 0.0 0.0 15.821915845937196 0.0 21 6.611380830962418E-4 0.0 0.0 16.427518330053353 0.0 22 6.611380830962418E-4 0.0 0.0 17.053616094745497 0.0 23 6.611380830962418E-4 0.0 0.0 17.685223343463438 0.0 24 6.611380830962418E-4 0.0 0.0 18.19165511511516 0.0 25 6.611380830962418E-4 0.0 0.0 18.6480607718126 0.0 26 6.611380830962418E-4 0.0 0.0 19.10380529042694 0.0 27 6.611380830962418E-4 0.0 0.0 19.61618730482653 0.0 28 6.611380830962418E-4 0.0 0.0 20.077220928105643 0.0 29 6.611380830962418E-4 0.0 0.0 20.565801971513764 0.0 30 6.611380830962418E-4 0.0 0.0 21.126006307257313 0.0 31 6.611380830962418E-4 0.0 0.0 21.59827927794906 0.0 32 6.611380830962418E-4 0.0 0.0 22.083113872219638 0.0 33 6.611380830962418E-4 0.0 0.0 22.580289710708012 0.0 34 6.611380830962418E-4 0.0 0.0 23.075041376225034 0.0 35 6.611380830962418E-4 0.0 0.0 23.57794707810024 0.0 36 6.611380830962418E-4 0.0 0.0 24.063883569175978 0.0 37 6.611380830962418E-4 0.0 0.0 24.584419619933755 0.0 38 6.611380830962418E-4 0.0 0.0 25.1274343655168 0.0 39 6.611380830962418E-4 0.0 0.0 25.931598653922862 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGAATG 20 7.028768E-4 45.000004 1 CTCACGA 35 1.2097553E-7 45.0 24 CCATACG 50 2.1827873E-11 45.0 2 CAACGAG 85 0.0 42.35294 14 CGTTTTT 1870 0.0 41.631016 1 AACACGT 60 3.6379788E-12 41.249996 41 TCACGAC 55 6.002665E-11 40.909092 25 CATACGG 55 6.002665E-11 40.909092 3 ACAACGA 90 0.0 40.0 13 TATTGCG 40 3.45206E-7 39.375004 1 AATTATC 80 0.0 39.375004 45 CGGTCTA 40 3.45206E-7 39.375004 31 ACGGTCT 40 3.45206E-7 39.375004 30 ATAGCGG 70 0.0 38.571426 2 TACGGGT 70 0.0 38.571426 4 TACGGGA 135 0.0 38.333332 4 CGCACGG 65 9.094947E-12 38.076927 2 ATTGCGG 95 0.0 37.894737 2 AACGTAG 30 1.1388333E-4 37.499996 1 TCCGAAC 60 1.546141E-10 37.499996 17 >>END_MODULE