SRR2935506.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935506.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	418483
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	1746	0.41722124913078906	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1738	0.41530958246810507	No Hit
CCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	1308	0.3125574993488386	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGCT	936	0.22366499953403127	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTG	557	0.13309979138937542	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTC	460	0.1099208331043316	No Hit
TCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCCGTCTTCTGC	458	0.1094429164386606	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCAAATGCTCGTATGCC	443	0.10585854144612802	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTAGG	30	2.16218E-6	45.000004	2
CTACGAA	55	1.8189894E-12	45.0	11
CCATACG	35	1.209446E-7	45.0	2
CGAATAT	55	1.8189894E-12	45.0	14
GCTACGA	55	1.8189894E-12	45.0	10
CGACTGG	25	3.8865393E-5	45.0	2
ATACGAG	20	7.02814E-4	45.0	1
CTTACGG	20	7.02814E-4	45.0	2
CGTTTTT	705	0.0	41.80851	1
GTTTGCG	50	1.0786607E-9	40.5	1
AACGGGA	120	0.0	39.375004	4
CATACGG	40	3.451205E-7	39.375	3
GCGTAAG	40	3.451205E-7	39.375	1
CGGGATA	115	0.0	39.130436	6
CACAACG	230	0.0	39.130436	12
CGACAGG	35	6.23877E-6	38.571426	2
TTGCGAG	35	6.23877E-6	38.571426	1
AGCTACG	65	9.094947E-12	38.07692	9
ATAACGT	95	0.0	37.894737	31
ATAGCGG	60	1.546141E-10	37.500004	2