SRR2935505.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935505.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	443637
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1992	0.4490157493626546	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1496	0.33721263104745547	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	1057	0.23825785495799495	No Hit
CTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGCT	860	0.19385218094974044	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTG	574	0.12938506030831515	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCC	469	0.10571706147142822	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTAACATCGTATGCCGTCTTCTGC	468	0.10549165195869595	No Hit

$Adapter graph$

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGACAC	30	2.1624764E-6	45.000004	34
CTTCGAA	20	7.0285983E-4	45.0	16
CGTATGG	40	6.7993824E-9	45.0	2
GCGCGAC	20	7.0285983E-4	45.0	9
CGCGACC	20	7.0285983E-4	45.0	10
CTACGGG	35	1.2096643E-7	45.0	3
AGCGCGT	20	7.0285983E-4	45.0	30
TTAACGG	45	3.8380676E-10	45.0	2
AGTACGG	45	3.8380676E-10	45.0	2
TACGTAG	20	7.0285983E-4	45.0	1
TAGGGCG	105	0.0	42.857143	5
CGTTTTT	1010	0.0	42.326733	1
AACGGGA	80	0.0	42.1875	4
CGGGTAT	55	6.002665E-11	40.909092	6
ATAGCGG	50	1.0786607E-9	40.500004	2
ACGGGCC	40	3.4518234E-7	39.375	5
ACGGGTA	105	0.0	38.57143	5
CCGTAGG	35	6.2396175E-6	38.571426	2
ATCCCGC	35	6.2396175E-6	38.571426	33
TGCGAGG	135	0.0	38.333336	2