SRR2935502.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935502.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	567833
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2060	0.3627827195671967	No Hit
GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	1753	0.3087175278647067	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	1219	0.2146757937633072	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1007	0.17734087310881896	No Hit
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT	950	0.16730271048001788	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGC	805	0.14176703361727833	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCG	787	0.1385970875239727	No Hit
CGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	630	0.11094811326569608	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CACGGCA	20	7.030269E-4	45.0	41
TTACGTT	20	7.030269E-4	45.0	25
ACGTAAG	20	7.030269E-4	45.0	1
TCACGAC	30	2.163555E-6	44.999996	25
TCTACGG	30	2.163555E-6	44.999996	2
TACGCGG	45	1.9254003E-8	40.0	2
AATTGCG	45	1.9254003E-8	40.0	1
GGCGATA	145	0.0	38.793102	8
ACCGGGT	35	6.242706E-6	38.571426	4
GCGAACG	35	6.242706E-6	38.571426	1
CACGACG	35	6.242706E-6	38.571426	26
TAGCCGT	35	6.242706E-6	38.571426	44
GCGATTA	35	6.242706E-6	38.571426	9
GTTCACG	35	6.242706E-6	38.571426	1
CGTTTTT	950	0.0	37.894737	1
CGTTAGG	90	0.0	37.5	2
CGTAAGG	90	0.0	37.5	2
CGCATCG	30	1.13919465E-4	37.499996	21
ATTCGCA	30	1.13919465E-4	37.499996	13
TAACGCC	30	1.13919465E-4	37.499996	12