SRR2935492.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935492.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	551988
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9064	1.6420646825655631	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC	5230	0.9474843656021508	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGC	3884	0.7036384848945991	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCG	3408	0.6174047261896998	No Hit
GCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	1638	0.29674558142568314	Illumina Single End Adapter 1 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	1449	0.26250570664579664	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTT	1306	0.23659934636260208	No Hit
CGCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTG	1045	0.18931570976180642	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTC	957	0.17337333420291745	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT	827	0.1498220975818315	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCT	746	0.1351478655333087	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTC	659	0.11938665333304348	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAAACAGTT	649	0.11757501974680609	No Hit
CGTCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCT	643	0.11648803959506365	No Hit
CTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGCT	609	0.11032848540185657	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCAAACAGTTCGTATGCCGTCTTCTGC	597	0.1081545250983717	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAAACAGTTCGTA	580	0.10507474800176815	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGAACC	20	7.0300983E-4	45.0	33
TGGACGA	20	7.0300983E-4	45.0	5
GTTTACG	20	7.0300983E-4	45.0	1
CACTCGT	20	7.0300983E-4	45.0	38
TCGTGCG	35	1.2103919E-7	45.0	1
CGGATTG	20	7.0300983E-4	45.0	2
GCGATAC	25	3.8881622E-5	45.0	9
ATCGAAT	55	1.8189894E-12	45.0	43
CCCCTCG	30	2.1634442E-6	44.999996	40
CGTTTTT	4030	0.0	43.492558	1
GGCGAAC	115	0.0	43.043476	32
CCGATGA	585	0.0	41.923073	18
CGATGAA	615	0.0	40.609756	19
CGGCGAA	150	0.0	40.5	31
TACGGGT	50	1.0786607E-9	40.5	4
GCGTAAG	50	1.0786607E-9	40.5	1
CCGATCG	45	1.9252184E-8	40.0	40
GCGCGAC	45	1.9252184E-8	40.0	9
CGCGACC	45	1.9252184E-8	40.0	10
GGCGCGA	45	1.9252184E-8	40.0	8