SRR2935490.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935490.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	155056
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	1085	0.6997471881126819	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	997	0.6429934991228976	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	688	0.4437106593746775	No Hit
CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT	578	0.37276854813744714	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTC	470	0.3031162934681663	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGC	425	0.27409452068929935	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCG	404	0.2605510267258281	No Hit
TCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	341	0.2199205448354143	TruSeq Adapter, Index 13 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC	267	0.17219585182127747	No Hit
CGCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG	262	0.16897121040140337	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCC	243	0.15671757300588174	No Hit
ACCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTG	159	0.10254359715199671	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGTAGG	30	2.1533288E-6	45.000004	2
TATTAGG	30	2.1533288E-6	45.000004	2
TGTTTGA	20	7.0144E-4	45.0	32
ATGGGCC	35	1.2028613E-7	45.0	5
GGTAAAC	25	3.8751597E-5	45.0	8
CCTAGGG	25	3.8751597E-5	45.0	3
CGCATGG	20	7.0144E-4	45.0	2
ATAGCGC	20	7.0144E-4	45.0	23
TAAGTAT	20	7.0144E-4	45.0	15
TGCGGGA	50	2.1827873E-11	45.0	4
TGTGCGG	25	3.8751597E-5	45.0	2
TCGATAG	20	7.0144E-4	45.0	1
AGTATGG	45	3.8016879E-10	45.0	2
AACGGTT	20	7.0144E-4	45.0	11
TTATAAG	20	7.0144E-4	45.0	15
GTTGTGC	20	7.0144E-4	45.0	31
TTAAGTA	20	7.0144E-4	45.0	14
AAGCACG	20	7.0144E-4	45.0	1
GTATGAG	20	7.0144E-4	45.0	1
GCGGGCC	35	1.2028613E-7	45.0	5