SRR2935487.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935487.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	401397
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTC	3643	0.9075802758864665	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGC	3580	0.89188509131857	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCG	3075	0.7660744848616208	No Hit
GCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	2217	0.5523210188416954	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1279	0.31863715971967904	No Hit
CCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	880	0.21923432412300042	No Hit
CTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGCT	729	0.18161570714280376	No Hit
GAATGACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCT	721	0.17962266783259465	No Hit
GAACTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCT	716	0.178377018263714	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTC	590	0.14698664912792075	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACACAACTT	571	0.14225318076617413	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACACAACTTCGTA	559	0.1392636218008605	No Hit
TCTGTCTCTTATACACATCTGACGCACACAACTTCGTATGCCGTCTTCTGC	413	0.10289065438954452	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	55	1.8189894E-12	45.0	6
CTATGCG	25	3.886254E-5	45.0	19
CTCACGA	35	1.2092823E-7	45.0	24
ACACGCG	40	6.7957444E-9	45.0	36
TTAATCG	20	7.0277945E-4	45.0	20
CGACGGT	35	1.2092823E-7	45.0	28
TTCACGA	20	7.0277945E-4	45.0	38
TTCGTAA	20	7.0277945E-4	45.0	29
TCGATTA	20	7.0277945E-4	45.0	41
TACGGGA	40	6.7957444E-9	45.0	4
TACGGCA	20	7.0277945E-4	45.0	29
TACGCGG	25	3.886254E-5	45.0	2
GTTCGAT	25	3.886254E-5	45.0	39
TCGTAAA	20	7.0277945E-4	45.0	30
CGTAAAA	20	7.0277945E-4	45.0	31
ATAACGG	20	7.0277945E-4	45.0	2
GCTACGA	40	6.7957444E-9	45.0	10
TGTACGA	20	7.0277945E-4	45.0	19
CGTAAGG	65	0.0	41.53846	2
CGATGAA	260	0.0	41.53846	19