SRR2935484.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935484.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228888
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGC	5351	2.337824612911118	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTC	4963	2.1683093914927825	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCG	4712	2.0586487714515393	No Hit
GCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	1970	0.8606829541085597	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGCAAGAT	1025	0.44781727307678865	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCT	998	0.43602111076159517	No Hit
GAACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCT	814	0.3556324490580546	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCAGCAAGATCGTA	802	0.35038971025130194	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTC	763	0.33335080912935583	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	586	0.25602041172975426	No Hit
CCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	517	0.22587466359092656	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGCT	451	0.19703960015378702	Illumina Single End Adapter 1 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTTCTGC	282	0.12320436195868723	Illumina Single End Adapter 1 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATGCCGTCTT	264	0.11534025374855825	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCCAGCAAGATCGTATG	247	0.107913040438992	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	115	0.0	45.000004	31
GATCGAA	115	0.0	45.000004	42
CGGCCCA	30	2.1578599E-6	45.000004	31
CGTAAGC	30	2.1578599E-6	45.000004	43
TTTGCGG	30	2.1578599E-6	45.000004	2
TCGAATG	120	0.0	45.000004	44
CCCGATC	60	0.0	45.000004	39
CGAGTTG	25	3.8809856E-5	45.0	20
TTGGACG	20	7.021436E-4	45.0	1
TTTACGG	25	3.8809856E-5	45.0	2
CCGATTA	25	3.8809856E-5	45.0	18
CATGCGG	35	1.2062264E-7	45.0	2
CCGATCG	55	1.8189894E-12	45.0	40
GTTTACG	25	3.8809856E-5	45.0	1
GACCGAT	45	3.8198777E-10	45.0	9
AAGACGC	20	7.021436E-4	45.0	39
GTTAGCG	25	3.8809856E-5	45.0	1
ATGTACT	20	7.021436E-4	45.0	11
AATGCGG	20	7.021436E-4	45.0	2
CCGTAAG	25	3.8809856E-5	45.0	42