SRR2935483.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935483.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	346839
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1512	0.4359371350972642	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1510	0.4353604986751778	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1496	0.43132404372057354	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	1020	0.2940845752640274	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTG	555	0.1600166071289561	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	526	0.15165537900870432	No Hit
TCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	444	0.1280132857031649	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	430	0.12397683074856058	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCC	408	0.11763383010561096	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	370	0.10667773808597071	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCTCGG	20	7.026466E-4	45.000004	2
TACCCCG	20	7.026466E-4	45.000004	29
CCGATTA	20	7.026466E-4	45.000004	11
TATGCGG	40	6.7921064E-9	45.000004	2
CAGTCTA	20	7.026466E-4	45.000004	27
CCTCTCA	20	7.026466E-4	45.000004	25
CACGACG	25	3.885154E-5	45.0	26
TTCGGCC	35	1.2086457E-7	45.0	12
AGGGCCG	25	3.885154E-5	45.0	6
CGGTCTA	30	2.161103E-6	44.999996	31
CGCCGCA	30	2.161103E-6	44.999996	18
CGTTTTT	695	0.0	42.08633	1
GTGCACG	65	0.0	41.53846	1
TGCATTA	185	0.0	41.351353	15
TGCGGGT	60	3.6379788E-12	41.249996	4
TATGGGC	105	0.0	40.714287	4
CTACGAA	50	1.0768417E-9	40.5	11
TACGAAT	50	1.0768417E-9	40.5	12
CGAATAT	50	1.0768417E-9	40.5	14
GCTACGA	50	1.0768417E-9	40.5	10