SRR2935477.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935477.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	427057
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGC	4273	1.0005690106941227	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC	3944	0.9235301142470443	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCG	3831	0.8970699461664369	No Hit
GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	2939	0.6881985308752695	No Hit
CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	1351	0.31635121306991804	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1185	0.2774805236771672	No Hit
CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT	983	0.23018004622333788	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCT	934	0.21870616802909215	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTACCTT	739	0.17304481603158361	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT	675	0.15805852614522184	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTC	656	0.1536094713352082	No Hit
TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	652	0.15267282821731057	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTA	631	0.1477554518483481	No Hit
ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC	466	0.10911892323507166	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC	466	0.10911892323507166	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG	437	0.10232826063031397	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCACG	20	7.028301E-4	45.000004	1
CCCTCGA	20	7.028301E-4	45.000004	41
CGAAAGG	40	6.7975634E-9	45.000004	2
GCGTTAG	20	7.028301E-4	45.000004	1
CGATGTC	20	7.028301E-4	45.000004	10
CAGTCGA	20	7.028301E-4	45.000004	21
TAGTACG	20	7.028301E-4	45.000004	1
TCAGTCG	20	7.028301E-4	45.000004	20
CGTGGTT	25	3.8866747E-5	45.0	14
TTTACGG	25	3.8866747E-5	45.0	2
GCGAAGT	25	3.8866747E-5	45.0	9
CCGTGGT	25	3.8866747E-5	45.0	13
GCACGAG	25	3.8866747E-5	45.0	1
AGTAACG	25	3.8866747E-5	45.0	1
AGCGACT	30	2.1622855E-6	44.999996	19
ACGGGTA	75	0.0	42.0	5
CGGGACC	125	0.0	41.399998	6
CGGGTCA	60	3.6379788E-12	41.249996	6
TAAGTAG	55	6.002665E-11	40.909092	1
CGTAAGG	55	6.002665E-11	40.909092	2