##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935477.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 427057 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.119487562550198 31.0 31.0 33.0 28.0 34.0 2 31.094781258707854 31.0 31.0 34.0 28.0 34.0 3 30.925059184137012 31.0 30.0 34.0 27.0 34.0 4 34.7822304750888 35.0 35.0 37.0 32.0 37.0 5 34.788939181420744 35.0 35.0 37.0 32.0 37.0 6 34.990600786311894 36.0 35.0 37.0 32.0 37.0 7 35.44062502195257 37.0 35.0 37.0 33.0 37.0 8 35.15721788894691 37.0 35.0 37.0 32.0 37.0 9 37.008158161556885 39.0 37.0 39.0 33.0 39.0 10 36.203331171248806 37.0 35.0 39.0 32.0 39.0 11 36.595264800717466 38.0 35.0 39.0 32.0 39.0 12 36.75529261901807 39.0 35.0 39.0 33.0 39.0 13 36.80139887649658 39.0 37.0 39.0 33.0 39.0 14 37.82950519485689 39.0 37.0 41.0 33.0 41.0 15 37.97381380003138 40.0 37.0 41.0 33.0 41.0 16 37.971027286755636 39.0 37.0 41.0 33.0 41.0 17 37.88297815045767 39.0 37.0 41.0 33.0 41.0 18 37.90237134621374 39.0 37.0 41.0 33.0 41.0 19 37.79254291581686 39.0 37.0 41.0 33.0 41.0 20 37.83597037397818 39.0 37.0 41.0 33.0 41.0 21 37.87713115579419 39.0 37.0 41.0 33.0 41.0 22 38.00928915812175 40.0 37.0 41.0 34.0 41.0 23 38.03446144191525 40.0 37.0 41.0 34.0 41.0 24 38.01084866891305 40.0 37.0 41.0 34.0 41.0 25 37.64545482219001 39.0 36.0 41.0 33.0 41.0 26 37.73399569612487 39.0 36.0 41.0 33.0 41.0 27 37.79622860648578 40.0 37.0 41.0 33.0 41.0 28 37.71974701269386 40.0 36.0 41.0 33.0 41.0 29 37.75335845097961 40.0 36.0 41.0 33.0 41.0 30 37.482108945644256 40.0 36.0 41.0 33.0 41.0 31 37.50161688018227 39.0 36.0 41.0 33.0 41.0 32 37.49600170469048 40.0 36.0 41.0 33.0 41.0 33 37.50898123669674 40.0 36.0 41.0 33.0 41.0 34 37.47311248849685 40.0 36.0 41.0 33.0 41.0 35 37.48367782286674 40.0 36.0 41.0 33.0 41.0 36 37.34351620509674 40.0 36.0 41.0 32.0 41.0 37 37.37921635753541 40.0 36.0 41.0 33.0 41.0 38 37.22604242525003 40.0 36.0 41.0 32.0 41.0 39 37.19653348382066 40.0 36.0 41.0 32.0 41.0 40 37.07417042689852 39.0 36.0 41.0 31.0 41.0 41 36.955294023982745 39.0 35.0 41.0 31.0 41.0 42 37.063836911700314 39.0 36.0 41.0 32.0 41.0 43 37.033892431221126 39.0 35.0 41.0 32.0 41.0 44 37.06777315440328 39.0 35.0 41.0 32.0 41.0 45 37.0711029206874 39.0 35.0 41.0 32.0 41.0 46 36.958359188586066 39.0 35.0 41.0 31.0 41.0 47 36.91799455342027 39.0 35.0 41.0 31.0 41.0 48 36.86335313552992 39.0 35.0 41.0 31.0 41.0 49 36.9102297819729 39.0 35.0 41.0 31.0 41.0 50 36.79837117761797 39.0 35.0 41.0 31.0 41.0 51 35.71391406767715 38.0 34.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 8.0 9 24.0 10 14.0 11 16.0 12 16.0 13 12.0 14 7.0 15 18.0 16 28.0 17 56.0 18 112.0 19 184.0 20 344.0 21 676.0 22 1072.0 23 1577.0 24 2006.0 25 2533.0 26 3066.0 27 3445.0 28 4023.0 29 4796.0 30 6285.0 31 8355.0 32 11154.0 33 15610.0 34 26487.0 35 30506.0 36 34582.0 37 53419.0 38 98859.0 39 117748.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 45.234476896526694 20.346464289310326 23.807594770721472 10.611464043441508 2 32.35516570387559 27.049550762544577 23.38423208143175 17.211051452148073 3 31.03801131933208 26.17800434134085 26.600430387512674 16.183553951814396 4 27.574773390905666 23.982044551429905 29.402866596262328 19.04031546140211 5 26.6697419782371 29.493252657139447 24.773273825273908 19.063731539349547 6 22.692521138864365 36.69627239455155 25.944780204984347 14.66642626159974 7 76.21488466410807 5.889846086119651 12.990069241342491 4.905200008429788 8 75.93787246198985 7.977155274354478 9.937315159334702 6.1476571043209685 9 70.93198331838607 6.685056093214723 11.942433913974012 10.440526674425193 10 37.09879477446805 24.427418353990216 21.954212201181576 16.519574670360164 11 28.774379064153027 25.395907337896347 25.365934758123622 20.463778839827 12 24.41805192281124 21.375132593541377 31.631843056079166 22.574972427568216 13 24.027471742647936 23.81860032735677 33.914442334395645 18.23948559559965 14 20.11370847451277 28.016166460214915 30.06624408451331 21.803880980759008 15 18.69258670388262 26.067948774987883 35.634587420414604 19.604877100714894 16 20.011380213882457 25.81786506250922 30.52262344370892 23.648131279899403 17 20.571961119944177 26.502785342471846 29.742399726500206 23.182853811083767 18 20.417415005491073 25.597988090582756 32.12100492440119 21.863591979524983 19 21.166729499809158 27.920863022968827 28.64348318842684 22.268924288795173 20 22.148799808924803 27.86747436524867 30.761701599552282 19.222024226274247 21 20.98548905649597 29.55483694214121 29.951271141791374 19.50840285957144 22 19.087381778076463 25.556307471836316 29.919659436562334 25.436651313524894 23 18.813179505311936 28.254542133719855 30.0407205595506 22.89155780141761 24 21.223864730000912 25.51907590789988 29.273609845992453 23.98344951610675 25 18.816457756224576 29.932304118653953 27.44621912297422 23.805019002147255 26 17.601397471531904 26.89640961276832 30.48726516600829 25.014927749691495 27 20.953643190487455 26.522689008727173 29.707509770358527 22.816158030426852 28 16.844355671491158 26.538377780951954 32.5106484614466 24.106618086110284 29 19.19673486209101 24.304718105545632 30.615351112380786 25.883195919982576 30 19.62759069632391 27.32609464310385 31.325794917306123 21.72051974326612 31 19.4931824089056 25.9918465216587 28.974352369824167 25.540618699611528 32 19.868073816844124 27.30291272593588 29.30826564135467 23.520747815865327 33 18.89045256253849 26.240056947901568 29.838873967643664 25.030616521916276 34 17.93156417059081 24.038711460062707 30.6261225082366 27.403601861109877 35 17.934139939165032 23.425444378619247 30.518876871237328 28.121538810978393 36 18.07768049698284 25.450466799513883 31.951004198502776 24.520848505000505 37 17.31314555199891 24.215737009345357 35.4325066677282 23.038610770927534 38 16.905705795713452 27.0411209744835 31.211992778481562 24.841180451321488 39 19.574202038603747 24.81682773025615 31.018575974635702 24.5903942565044 40 18.99746403875829 24.42133017372388 29.930430832418153 26.65077495509967 41 17.1504038102642 23.922567713443403 29.203595772929607 29.723432703362786 42 17.93086168825239 22.729050220462373 33.30047277061376 26.039615320671476 43 19.92005750988744 23.142109835455223 32.4036369852268 24.534195669430545 44 18.95952999248344 23.713462137372762 31.318535933142417 26.00847193700138 45 18.792807517497664 22.936984992635644 29.602839901933464 28.667367587933228 46 21.346330817666026 24.829004090788818 29.038980744959105 24.785684346586052 47 16.101363518218882 24.10685224688976 34.52372868258804 25.26805555230332 48 17.897376696787546 23.22781268074285 31.591567402009566 27.283243220460037 49 18.601263999887603 21.414471604493077 35.261335137932406 24.722929257686914 50 18.623743434717145 21.561290413223528 32.48114420323282 27.333821948826504 51 17.68944192461428 21.13699108081591 29.294215994586203 31.879350999983608 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 97.0 1 244.0 2 391.0 3 1246.5 4 2102.0 5 1405.5 6 709.0 7 698.5 8 688.0 9 685.0 10 682.0 11 667.5 12 653.0 13 674.5 14 696.0 15 675.5 16 655.0 17 717.0 18 779.0 19 879.0 20 979.0 21 1082.5 22 1186.0 23 1374.0 24 1562.0 25 1790.5 26 2533.0 27 3047.0 28 3825.5 29 4604.0 30 5056.0 31 5508.0 32 7125.5 33 8743.0 34 9652.0 35 10561.0 36 11981.5 37 13402.0 38 14908.5 39 16415.0 40 19333.5 41 22252.0 42 25989.0 43 29726.0 44 42710.0 45 55694.0 46 54469.0 47 53244.0 48 52023.5 49 50803.0 50 42861.0 51 34919.0 52 30977.5 53 27036.0 54 23626.0 55 20216.0 56 18440.0 57 16664.0 58 14559.0 59 12454.0 60 11538.0 61 10622.0 62 9018.5 63 7415.0 64 6065.5 65 4716.0 66 3574.0 67 2432.0 68 1929.0 69 1426.0 70 1087.0 71 748.0 72 634.5 73 521.0 74 436.5 75 276.5 76 201.0 77 130.5 78 60.0 79 37.5 80 15.0 81 30.5 82 46.0 83 26.5 84 7.0 85 5.0 86 3.0 87 2.5 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.5 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 427057.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.619618185689724 #Duplication Level Percentage of deduplicated Percentage of total 1 72.7286402925368 28.81480959554677 2 11.478620353739451 9.095571114272875 3 4.096473574975423 4.86902156844881 4 2.098291262698825 3.325339946819849 5 1.44903535519454 2.870511375518648 6 1.0606908091530816 2.5214498923029227 7 0.8137725468796474 2.2568950318157546 8 0.6732395604753575 2.1338795466828184 9 0.6054893054363331 2.1590329587215384 >10 4.892560590742159 32.68342796483 >50 0.06322400523611064 1.7305153650430245 >100 0.03220845549764127 2.153278165543089 >500 0.004175170157101647 1.245366103205891 >1k 0.0035787172775156974 4.140901371247974 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGC 4273 1.0005690106941227 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTC 3944 0.9235301142470443 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCG 3831 0.8970699461664369 No Hit GCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 2939 0.6881985308752695 No Hit CCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 1351 0.31635121306991804 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1185 0.2774805236771672 No Hit CTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGCT 983 0.23018004622333788 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCT 934 0.21870616802909215 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTTACCTT 739 0.17304481603158361 No Hit GAACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCT 675 0.15805852614522184 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTC 656 0.1536094713352082 No Hit TCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 652 0.15267282821731057 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTA 631 0.1477554518483481 No Hit ACTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTGC 466 0.10911892323507166 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCC 466 0.10911892323507166 No Hit CGCTGTCTCTTATACACATCTGACGCCTTTACCTTCGTATGCCGTCTTCTG 437 0.10232826063031397 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.3416077947440272E-4 0.0 0.0 0.2404831205202116 0.0 2 2.3416077947440272E-4 0.0 0.0 1.5770728497601023 0.0 3 2.3416077947440272E-4 0.0 0.0 2.0587415731389487 0.0 4 2.3416077947440272E-4 0.0 0.0 2.863552172192471 0.0 5 2.3416077947440272E-4 0.0 0.0 5.456648644092007 0.0 6 2.3416077947440272E-4 0.0 0.0 6.522782673038962 0.0 7 2.3416077947440272E-4 0.0 0.0 7.692884088072552 0.0 8 2.3416077947440272E-4 0.0 0.0 9.461266294663242 0.0 9 2.3416077947440272E-4 0.0 0.0 9.968692703784273 0.0 10 2.3416077947440272E-4 0.0 0.0 12.237944817670709 0.0 11 2.3416077947440272E-4 0.0 0.0 14.259454826873228 0.0 12 2.3416077947440272E-4 0.0 0.0 16.753735449834565 0.0 13 2.3416077947440272E-4 0.0 0.0 17.39416518169706 0.0 14 2.3416077947440272E-4 0.0 0.0 17.659703505621028 0.0 15 2.3416077947440272E-4 0.0 0.0 18.261730869649718 0.0 16 2.3416077947440272E-4 0.0 0.0 19.31264444793084 0.0 17 2.3416077947440272E-4 0.0 0.0 20.637760298976485 0.0 18 2.3416077947440272E-4 0.0 0.0 22.005961733445417 0.0 19 4.6832155894880543E-4 0.0 0.0 22.99856927763741 0.0 20 4.6832155894880543E-4 0.0 0.0 23.803379876690933 0.0 21 4.6832155894880543E-4 0.0 0.0 24.7477503003112 0.0 22 4.6832155894880543E-4 0.0 0.0 25.792107376767035 0.0 23 4.6832155894880543E-4 0.0 0.0 26.838103578679192 0.0 24 4.6832155894880543E-4 0.0 0.0 27.652280608911692 0.0 25 7.024823384232081E-4 0.0 0.0 28.365768503970195 0.0 26 7.024823384232081E-4 0.0 0.0 29.016267149350085 0.0 27 7.024823384232081E-4 0.0 0.0 29.712895468286433 0.0 28 7.024823384232081E-4 0.0 0.0 30.39008844252641 0.0 29 7.024823384232081E-4 0.0 0.0 31.07524288326851 0.0 30 7.024823384232081E-4 0.0 0.0 31.83626541656032 0.0 31 7.024823384232081E-4 0.0 0.0 32.55115827629567 0.0 32 7.024823384232081E-4 0.0 0.0 33.22109226637193 0.0 33 7.024823384232081E-4 0.0 0.0 33.900158526847704 0.0 34 7.024823384232081E-4 0.0 0.0 34.596552685004575 0.0 35 7.024823384232081E-4 0.0 0.0 35.2641450672861 0.0 36 7.024823384232081E-4 0.0 0.0 35.91675115968126 0.0 37 9.366431178976109E-4 0.0 0.0 36.55273183673374 0.0 38 9.366431178976109E-4 0.0 0.0 37.229456489414765 0.0 39 9.366431178976109E-4 0.0 0.0 37.89330229922469 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCACG 20 7.028301E-4 45.000004 1 CCCTCGA 20 7.028301E-4 45.000004 41 CGAAAGG 40 6.7975634E-9 45.000004 2 GCGTTAG 20 7.028301E-4 45.000004 1 CGATGTC 20 7.028301E-4 45.000004 10 CAGTCGA 20 7.028301E-4 45.000004 21 TAGTACG 20 7.028301E-4 45.000004 1 TCAGTCG 20 7.028301E-4 45.000004 20 CGTGGTT 25 3.8866747E-5 45.0 14 TTTACGG 25 3.8866747E-5 45.0 2 GCGAAGT 25 3.8866747E-5 45.0 9 CCGTGGT 25 3.8866747E-5 45.0 13 GCACGAG 25 3.8866747E-5 45.0 1 AGTAACG 25 3.8866747E-5 45.0 1 AGCGACT 30 2.1622855E-6 44.999996 19 ACGGGTA 75 0.0 42.0 5 CGGGACC 125 0.0 41.399998 6 CGGGTCA 60 3.6379788E-12 41.249996 6 TAAGTAG 55 6.002665E-11 40.909092 1 CGTAAGG 55 6.002665E-11 40.909092 2 >>END_MODULE