##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935475.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 518229 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.156762743883494 31.0 31.0 33.0 28.0 34.0 2 31.150508751922413 31.0 31.0 34.0 28.0 34.0 3 30.983306607696598 31.0 30.0 34.0 27.0 34.0 4 34.84164915510325 35.0 35.0 37.0 32.0 37.0 5 34.81040235108417 35.0 35.0 37.0 33.0 37.0 6 34.97537768052347 36.0 35.0 37.0 32.0 37.0 7 35.41233508738415 37.0 35.0 37.0 33.0 37.0 8 35.050865543996956 37.0 35.0 37.0 32.0 37.0 9 36.882378253629184 39.0 37.0 39.0 32.0 39.0 10 36.225919429441426 37.0 35.0 39.0 32.0 39.0 11 36.59304091434482 38.0 35.0 39.0 32.0 39.0 12 36.758815118412905 39.0 35.0 39.0 33.0 39.0 13 36.7770290740194 39.0 35.0 39.0 33.0 39.0 14 37.85002962011003 40.0 37.0 41.0 33.0 41.0 15 37.96943050273142 40.0 37.0 41.0 33.0 41.0 16 38.0274974962806 40.0 37.0 41.0 33.0 41.0 17 37.84961667525361 39.0 37.0 41.0 33.0 41.0 18 37.85803573323762 39.0 37.0 41.0 33.0 41.0 19 37.77361552518288 39.0 37.0 41.0 33.0 41.0 20 37.69087025234018 39.0 36.0 41.0 33.0 41.0 21 37.77896837112551 39.0 36.0 41.0 33.0 41.0 22 37.879219418442425 40.0 37.0 41.0 33.0 41.0 23 37.88416510847521 40.0 37.0 41.0 33.0 41.0 24 37.85013961009515 40.0 36.0 41.0 33.0 41.0 25 37.54495985365543 39.0 36.0 41.0 33.0 41.0 26 37.57308448581612 39.0 36.0 41.0 33.0 41.0 27 37.586024711083326 40.0 36.0 41.0 33.0 41.0 28 37.49446287259107 40.0 36.0 41.0 33.0 41.0 29 37.498266210497675 40.0 36.0 41.0 33.0 41.0 30 37.259186575818795 39.0 36.0 41.0 32.0 41.0 31 37.257924585463186 39.0 36.0 41.0 32.0 41.0 32 37.176007131982196 39.0 36.0 41.0 32.0 41.0 33 37.15585387926959 40.0 36.0 41.0 32.0 41.0 34 37.072643561051194 40.0 36.0 41.0 31.0 41.0 35 37.06086112510106 40.0 36.0 41.0 32.0 41.0 36 36.951675803554025 40.0 35.0 41.0 31.0 41.0 37 36.931233103512156 40.0 35.0 41.0 31.0 41.0 38 36.77327590698321 39.0 35.0 41.0 31.0 41.0 39 36.672251070472704 39.0 35.0 41.0 30.0 41.0 40 36.53758859500337 39.0 35.0 41.0 30.0 41.0 41 36.3942600664957 39.0 35.0 41.0 30.0 41.0 42 36.4586350821741 39.0 35.0 41.0 30.0 41.0 43 36.4719998301909 39.0 35.0 41.0 30.0 41.0 44 36.50459738841323 39.0 35.0 41.0 30.0 41.0 45 36.51555586429937 39.0 35.0 41.0 30.0 41.0 46 36.36658311287095 39.0 35.0 41.0 30.0 41.0 47 36.22734351030143 39.0 35.0 41.0 30.0 41.0 48 36.16690304865224 39.0 35.0 40.0 30.0 41.0 49 36.18536785861077 39.0 35.0 40.0 30.0 41.0 50 36.05219893136046 39.0 35.0 40.0 30.0 41.0 51 34.84020963705235 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 8.0 9 31.0 10 30.0 11 18.0 12 27.0 13 15.0 14 18.0 15 21.0 16 43.0 17 91.0 18 177.0 19 362.0 20 818.0 21 1368.0 22 2169.0 23 2780.0 24 3366.0 25 4119.0 26 4685.0 27 5028.0 28 5541.0 29 6351.0 30 8172.0 31 10601.0 32 14081.0 33 19894.0 34 32754.0 35 37597.0 36 42635.0 37 64288.0 38 114884.0 39 136229.0 40 25.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 47.09153675305704 19.695347037699552 21.856746727797944 11.35636948144546 2 32.46653506461429 28.281512613149783 22.95452396527404 16.297428356961884 3 31.062908482543435 28.040499470311385 24.78672555954993 16.109866487595255 4 27.44693948042275 23.402781395869393 30.57123395255765 18.579045171150206 5 28.185030170059953 28.711245414671893 23.611569402715787 19.492155012552363 6 23.051006408363868 38.047851432474836 24.92816882111962 13.972973338041678 7 74.24748518512087 6.205943704424106 14.899783686362591 4.646787424092437 8 73.91191924805443 10.042278606561963 10.54089987245021 5.5049022729333945 9 67.9651273857696 7.602623550592498 12.319843158140513 12.112405905497377 10 38.637166194867525 23.852003650895647 21.619399917796958 15.891430236439874 11 30.850840072631986 25.166480455551504 24.56886820305309 19.41381126876342 12 25.50436197125209 21.30506011821029 30.17816447940968 23.012413431127936 13 25.346709659243306 22.73685957366338 32.720283889940546 19.196146877152763 14 20.690081025955706 28.94782036512816 28.809078611964985 21.553019996951157 15 18.503595900653956 25.70311580401714 34.98955095141337 20.803737343915525 16 20.913534364151758 25.286890544527612 30.177778549637324 23.62179654168331 17 20.86510017772066 26.337005455117335 29.701734175432097 23.09616019172991 18 20.64762875099618 26.04736516096166 29.98191919016497 23.323086897877193 19 21.84034471247267 27.404680170349398 27.772471243407836 22.982503873770092 20 23.955239865001765 26.262713973938162 30.563129427338108 19.218916733721965 21 22.489478589581054 29.418268757634173 28.977922887372188 19.114329765412588 22 20.382687962271508 24.971778885396226 30.166007691580365 24.47952546075191 23 21.83648541474908 28.174995995978612 28.788045439371395 21.200473149900912 24 22.352280555507313 25.96149578661171 27.994766792286807 23.69145686559417 25 19.97977727992837 29.88215634401008 27.024539344575466 23.11352703148608 26 19.54618518068267 25.736691694212404 30.061999617929523 24.6551235071754 27 23.24493611897443 26.870939295176456 27.626010894797474 22.25811369105164 28 18.701191944101932 27.64627220784634 30.490960559906917 23.161575288144817 29 20.741988580338035 25.02831759704687 29.425215493536644 24.804478329078457 30 20.10211701776628 27.655534522382965 30.905449135420827 21.336899324429933 31 21.81796078567583 27.511968647065295 26.135164184173405 24.53490638308547 32 22.744771133996746 30.346043930385985 26.0014395180509 20.907745417566364 33 21.725723570081954 26.11123653828713 28.476407148191246 23.686632743439677 34 22.476356977320837 26.91069006172947 27.147072047299552 23.465880913650143 35 21.158792734486106 26.93654735647754 28.048411030644754 23.8562488783916 36 20.033807448058678 28.784186141647805 27.00138355823391 24.18062285205961 37 20.290450746677628 28.234043251149586 30.08129610654749 21.394209895625295 38 19.10738302951012 29.674333161594586 26.905094080030256 24.31318972886504 39 22.71273896289092 26.479992435776463 27.624081245935677 23.18318735539694 40 21.40598075368225 25.124607075250516 31.06541702606377 22.403995145003464 41 20.268259784766965 26.743582470297877 27.58124304120379 25.406914703731363 42 20.0554195153108 27.17736753442976 29.11357720235649 23.653635747902953 43 21.049767573794597 25.25312168944617 28.03297383975038 25.66413689700885 44 21.07678265785975 25.472715729918626 29.103735993161322 24.3467656190603 45 20.589353355369923 24.78749741909465 27.763015963985033 26.860133261550395 46 22.8296756839158 27.095550422689584 27.111566508242497 22.963207385152124 47 19.806301847252854 25.463067485609642 32.20024352168636 22.53038714545114 48 20.440770393011583 26.053925967091768 28.430288540394304 25.075015099502345 49 20.091310984140215 24.197796726929603 31.80717404853839 23.903718240391797 50 20.429578429613162 23.870721244855073 30.0546669522547 25.645033373277066 51 19.549272618861547 23.66212620289486 28.320491520158075 28.468109658085517 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 166.0 1 391.0 2 616.0 3 2424.0 4 4232.0 5 2746.0 6 1260.0 7 1247.5 8 1235.0 9 1217.5 10 1200.0 11 1172.5 12 1145.0 13 1121.5 14 1098.0 15 1059.0 16 1020.0 17 1096.5 18 1173.0 19 1293.5 20 1414.0 21 1750.5 22 2087.0 23 2213.0 24 2339.0 25 2642.0 26 3568.0 27 4191.0 28 5283.0 29 6375.0 30 7450.5 31 8526.0 32 9336.0 33 10146.0 34 11237.5 35 12329.0 36 13792.0 37 15255.0 38 17243.5 39 19232.0 40 21966.5 41 24701.0 42 28283.5 43 31866.0 44 48193.5 45 64521.0 46 58056.0 47 51591.0 48 51586.0 49 51581.0 50 45024.0 51 38467.0 52 34645.5 53 30824.0 54 28198.0 55 25572.0 56 24045.0 57 22518.0 58 21328.5 59 20139.0 60 19410.0 61 18681.0 62 17059.5 63 15438.0 64 12141.5 65 8845.0 66 7399.0 67 5953.0 68 4744.5 69 3536.0 70 2978.0 71 2420.0 72 2093.0 73 1766.0 74 1336.5 75 684.0 76 461.0 77 326.5 78 192.0 79 175.5 80 159.0 81 118.0 82 77.0 83 43.5 84 10.0 85 9.5 86 9.0 87 6.5 88 4.0 89 5.0 90 6.0 91 3.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 518229.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 35.98682202159809 #Duplication Level Percentage of deduplicated Percentage of total 1 73.20956088474097 26.345794378385218 2 9.671649093792615 6.961038291873306 3 3.6405678795196676 3.9303740501346307 4 2.040335892677916 2.9370081853631445 5 1.3915472595199494 2.5038681781493493 6 1.1498477449513815 2.4827619689700766 7 0.9381852940095824 2.363361503916246 8 0.8316593889404746 2.394302272991351 9 0.7431522704793779 2.4069319643419105 >10 6.286430565935827 37.85567449341989 >50 0.05964809942763839 1.4639440569357771 >100 0.02982404971381854 1.941648009398925 >500 0.0032535326960529323 0.9704337236925483 >1k 0.0027112772467107766 1.788072433178126 >5k 0.0016267663480264661 3.6547864892494943 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTC 6688 1.2905491587695788 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGC 6370 1.2291863249644461 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCG 5671 1.0943038695248626 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2731 0.5269871041566566 No Hit GCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC 2659 0.513093632351721 TruSeq Adapter, Index 15 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCT 1442 0.27825536587107247 No Hit GAATGACTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCT 1217 0.2348382664806485 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTAATGACT 1114 0.21496288320414333 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTC 976 0.18833372891135 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTAATGACTCGTA 903 0.1742472922202347 No Hit CCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGC 856 0.16517794256979057 TruSeq Adapter, Index 15 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTGCT 811 0.1564945226917058 TruSeq Adapter, Index 14 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTT 769 0.14838999747216 No Hit CGCTGTCTCTTATACACATCTGACGCCTAATGACTCGTATGCCGTCTTCTG 658 0.12697089510621754 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.9296488617966188E-4 0.0 0.0 0.16421311813889228 0.0 2 1.9296488617966188E-4 0.0 0.0 1.0136445471017639 0.0 3 1.9296488617966188E-4 0.0 0.0 1.3517190276885316 0.0 4 1.9296488617966188E-4 0.0 0.0 2.0353936194230737 0.0 5 1.9296488617966188E-4 0.0 0.0 4.400757194213369 0.0 6 1.9296488617966188E-4 0.0 0.0 5.33625096241237 0.0 7 1.9296488617966188E-4 0.0 0.0 6.2671135733430585 0.0 8 1.9296488617966188E-4 0.0 0.0 7.548979312234553 0.0 9 1.9296488617966188E-4 0.0 0.0 7.970221658764754 0.0 10 1.9296488617966188E-4 0.0 0.0 9.995388139220307 0.0 11 1.9296488617966188E-4 0.0 0.0 11.27185086129877 0.0 12 1.9296488617966188E-4 0.0 0.0 13.527996310511377 0.0 13 1.9296488617966188E-4 0.0 0.0 14.066947237611172 0.0 14 1.9296488617966188E-4 0.0 0.0 14.312012643059342 0.0 15 1.9296488617966188E-4 0.0 0.0 14.816229890646799 0.0 16 1.9296488617966188E-4 0.0 0.0 15.567635157430402 0.0 17 1.9296488617966188E-4 0.0 0.0 16.40664648253957 0.0 18 1.9296488617966188E-4 0.0 0.0 17.284057819998495 0.0 19 1.9296488617966188E-4 0.0 0.0 18.032182683717043 0.0 20 1.9296488617966188E-4 0.0 0.0 18.58734266125593 0.0 21 3.8592977235932377E-4 0.0 0.0 19.218530803949605 0.0 22 3.8592977235932377E-4 0.0 0.0 19.949095863025804 0.0 23 3.8592977235932377E-4 0.0 0.0 20.639910155548996 0.0 24 3.8592977235932377E-4 0.0 0.0 21.1721073116325 0.0 25 3.8592977235932377E-4 0.0 0.0 21.695814012724103 0.0 26 3.8592977235932377E-4 0.0 0.0 22.17861215794562 0.0 27 3.8592977235932377E-4 0.0 0.0 22.697494736882728 0.0 28 5.788946585389856E-4 0.0 0.0 23.161768253030996 0.0 29 5.788946585389856E-4 0.0 0.0 23.651127204382618 0.0 30 5.788946585389856E-4 0.0 0.0 24.216900250661386 0.0 31 5.788946585389856E-4 0.0 0.0 24.714170762346377 0.0 32 5.788946585389856E-4 0.0 0.0 25.218002080161472 0.0 33 5.788946585389856E-4 0.0 0.0 25.718938924683876 0.0 34 5.788946585389856E-4 0.0 0.0 26.1969129477509 0.0 35 5.788946585389856E-4 0.0 0.0 26.69823572204566 0.0 36 5.788946585389856E-4 0.0 0.0 27.19569919861683 0.0 37 5.788946585389856E-4 0.0 0.0 27.692583780529457 0.0 38 5.788946585389856E-4 0.0 0.0 28.18657388914939 0.0 39 5.788946585389856E-4 0.0 0.0 28.681914751972585 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTTGATC 30 2.1631859E-6 45.000004 16 CTTCGTC 30 2.1631859E-6 45.000004 36 CACCTCG 20 7.029696E-4 45.000004 16 TCGCTAT 20 7.029696E-4 45.000004 23 GCGTCTA 20 7.029696E-4 45.000004 24 CGACGGT 25 3.887831E-5 45.0 28 TTAGCCG 25 3.887831E-5 45.0 1 GCGAACA 35 1.21021E-7 45.0 33 CGGGGTA 55 1.8189894E-12 45.0 6 TACGGCT 765 0.0 41.47059 7 CGTAAGG 60 3.6379788E-12 41.250004 2 CCGATGA 670 0.0 40.97015 18 CGTTTTT 1200 0.0 40.6875 1 CGATGAA 675 0.0 40.666668 19 ACGGGCG 85 0.0 39.705883 5 CGGGAAT 125 0.0 39.600002 6 GATGAAT 725 0.0 39.41379 20 CCGATTA 40 3.453315E-7 39.375004 18 TAGCACG 40 3.453315E-7 39.375004 1 CTCGAAT 75 0.0 39.0 43 >>END_MODULE