SRR2935474.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935474.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	412216
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC	5366	1.3017447163622955	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC	4924	1.1945193781900751	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG	4617	1.1200438605003202	No Hit
GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	2300	0.5579599045160789	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1196	0.290139150348361	No Hit
GAACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT	1098	0.26636520659071944	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT	983	0.23846721136491547	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTATCGTT	940	0.22803578706309313	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTC	831	0.20159333941428764	No Hit
CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC	822	0.19941001804878997	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTA	779	0.1889785937469676	No Hit
CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT	577	0.13997515865468588	Illumina Single End Adapter 1 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAC	35	1.2093915E-7	45.000004	29
TACGGTT	35	1.2093915E-7	45.000004	33
TTGCCGG	35	1.2093915E-7	45.000004	2
TCGCCTA	20	7.028016E-4	45.0	33
CGGCGAA	40	6.7975634E-9	45.0	31
ACTGACG	20	7.028016E-4	45.0	43
CGCGATT	20	7.028016E-4	45.0	14
GCCGCGA	20	7.028016E-4	45.0	12
CCCCGTA	25	3.886438E-5	45.0	40
CCCGTAA	20	7.028016E-4	45.0	41
TTGCACG	20	7.028016E-4	45.0	1
CGATCGA	50	2.1827873E-11	45.0	41
CGATATA	20	7.028016E-4	45.0	10
CGATAAA	20	7.028016E-4	45.0	19
CGACGGT	30	2.1621017E-6	44.999996	28
CGATGAA	725	0.0	42.206898	19
CGGGACT	80	0.0	42.1875	6
ACGGGAC	75	0.0	42.0	5
CCGATGA	725	0.0	41.58621	18
TACGGCT	565	0.0	41.0177	7