SRR2935473.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935473.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	554955
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11237	2.0248488616194105	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT	2808	0.5059869719166419	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	2410	0.43426944527033723	No Hit
CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG	2174	0.3917434746961465	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC	2058	0.37084087899018836	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT	1602	0.28867205449090466	No Hit
CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	1276	0.22992855276553953	No Hit
GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC	1244	0.22416231946734422	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG	1120	0.20181816543683723	No Hit
CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	1047	0.18866394572532907	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC	1029	0.18542043949509418	No Hit
CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT	961	0.17316719373642908	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCC	703	0.12667693776972908	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTC	687	0.1237938211206314	No Hit
GAACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT	617	0.11118018578082907	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	20	7.0301286E-4	45.000004	1
TACTAGT	20	7.0301286E-4	45.000004	2
CCGCAAT	20	7.0301286E-4	45.000004	41
CGATCGA	25	3.8881888E-5	45.0	41
CGTTTTT	4555	0.0	43.863888	1
CCATACG	60	3.6379788E-12	41.249996	2
CGTTCTG	230	0.0	41.08696	1
CGGTCTA	50	1.0786607E-9	40.5	31
CGTTTCT	325	0.0	39.46154	1
TATGGGT	110	0.0	38.86364	4
ACGGGTA	70	0.0	38.571426	5
AACGGGA	175	0.0	38.571426	4
CGATAAG	35	6.2424515E-6	38.571426	10
GTTTTTT	5360	0.0	37.94776	2
AGCACGG	90	0.0	37.5	2
TCGCAAG	30	1.1391613E-4	37.499996	1
CCGATCG	30	1.1391613E-4	37.499996	40
ACGGGTC	30	1.1391613E-4	37.499996	5
GGGCGAT	645	0.0	36.97674	7
TCACGAC	55	2.743036E-9	36.818184	25