##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935473.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 554955 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.166456739735654 31.0 31.0 33.0 28.0 34.0 2 31.22247749817553 31.0 31.0 34.0 28.0 34.0 3 30.970208395275293 31.0 31.0 34.0 27.0 34.0 4 34.736039859087676 35.0 35.0 37.0 32.0 37.0 5 34.81502824553342 35.0 35.0 37.0 33.0 37.0 6 35.01519222279284 36.0 35.0 37.0 32.0 37.0 7 35.34091593012046 37.0 35.0 37.0 33.0 37.0 8 35.1612419024966 37.0 35.0 37.0 32.0 37.0 9 37.034972204953554 39.0 37.0 39.0 33.0 39.0 10 36.48338874323143 38.0 35.0 39.0 32.0 39.0 11 36.765854889135156 39.0 37.0 39.0 33.0 39.0 12 36.8481372363525 39.0 37.0 39.0 33.0 39.0 13 36.90333991044319 39.0 37.0 39.0 33.0 39.0 14 37.87662242884558 40.0 37.0 41.0 33.0 41.0 15 38.084412249641865 40.0 37.0 41.0 33.0 41.0 16 38.04558387617014 40.0 37.0 41.0 33.0 41.0 17 37.96622068456001 40.0 37.0 41.0 33.0 41.0 18 37.85668027137336 39.0 37.0 41.0 33.0 41.0 19 37.634458649800436 39.0 37.0 40.0 33.0 41.0 20 37.60944761286951 39.0 35.0 41.0 33.0 41.0 21 37.53534610914399 39.0 35.0 41.0 33.0 41.0 22 37.634334315394945 39.0 35.0 41.0 33.0 41.0 23 37.70199385535764 39.0 35.0 41.0 33.0 41.0 24 37.67679361389662 39.0 35.0 41.0 33.0 41.0 25 37.27080033516231 39.0 35.0 41.0 33.0 41.0 26 37.34861385157355 39.0 35.0 41.0 33.0 41.0 27 37.41551116757215 39.0 35.0 41.0 33.0 41.0 28 37.29903866079232 39.0 35.0 41.0 33.0 41.0 29 37.23553981854385 39.0 35.0 41.0 33.0 41.0 30 36.89817192384968 39.0 35.0 41.0 32.0 41.0 31 36.78217693326486 39.0 35.0 41.0 31.0 41.0 32 36.64887963888964 39.0 35.0 41.0 31.0 41.0 33 36.453404330080815 39.0 35.0 41.0 30.0 41.0 34 36.218677190042435 39.0 35.0 41.0 30.0 41.0 35 36.14235208260129 39.0 35.0 41.0 30.0 41.0 36 35.95247542593544 39.0 35.0 41.0 29.0 41.0 37 35.92803560649062 39.0 35.0 41.0 29.0 41.0 38 35.76485120415169 39.0 35.0 41.0 27.0 41.0 39 35.66571704012037 39.0 35.0 41.0 27.0 41.0 40 35.574713265039506 39.0 35.0 41.0 26.0 41.0 41 35.37399248587723 38.0 35.0 40.0 25.0 41.0 42 35.39235793893199 38.0 35.0 40.0 26.0 41.0 43 35.360638249948195 38.0 35.0 40.0 26.0 41.0 44 35.33494968060474 38.0 35.0 40.0 26.0 41.0 45 35.2969087583678 38.0 35.0 40.0 26.0 41.0 46 35.19408961086935 38.0 35.0 40.0 25.0 41.0 47 35.16224198358425 38.0 35.0 40.0 25.0 41.0 48 35.0618933066645 38.0 34.0 40.0 25.0 41.0 49 35.03104215657125 38.0 34.0 40.0 25.0 41.0 50 34.91162526691353 38.0 34.0 40.0 24.0 41.0 51 33.69972700489229 36.0 33.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 21.0 9 26.0 10 34.0 11 27.0 12 35.0 13 23.0 14 20.0 15 39.0 16 67.0 17 156.0 18 280.0 19 436.0 20 783.0 21 1189.0 22 1865.0 23 2872.0 24 4268.0 25 6614.0 26 8737.0 27 9413.0 28 9459.0 29 9355.0 30 10405.0 31 12356.0 32 15996.0 33 22570.0 34 38119.0 35 42227.0 36 45097.0 37 68210.0 38 117557.0 39 126678.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.97279058662414 19.476173743817064 21.28875314214666 19.262282527412133 2 39.93765260246327 22.106657296537556 22.631384526673333 15.324305574325848 3 30.179564108801614 21.913128091466877 32.17215810290924 15.735149696822265 4 27.076249425629108 23.19413285761909 31.904208449333733 17.82540926741808 5 24.006270778711787 27.176617923975815 30.288942346676755 18.52816895063564 6 23.174311430656537 31.470839978016237 30.87691794830211 14.477930643025111 7 71.85861916731987 5.510897279959636 17.20031353893559 5.430170013784901 8 72.21108017767206 5.464947608364642 16.751628510419764 5.572343703543531 9 65.69613752466417 6.949572487859376 19.160112081159735 8.194177906316728 10 36.24167725311061 22.196394302240723 26.08121379210927 15.480714652539396 11 27.813966898216975 22.724184843816165 30.781594904091325 18.68025335387554 12 24.701282085934896 19.906659098485463 34.99382832842303 20.398230487156617 13 23.883918515915706 20.26092205674334 37.0309304358011 18.824228991539854 14 19.52104224666865 23.932210719788092 36.39159931886369 20.15514771467957 15 18.536277716211224 23.70876917948302 38.392302078546905 19.362651025758844 16 22.10521573821301 23.864998062906 34.61145498283645 19.418331216044542 17 22.030795289708173 23.70462469929994 32.8594210341379 21.40515897685398 18 22.495157265003467 23.57452406050941 34.06023911848708 19.870079556000036 19 21.77672063500644 25.808939463560108 31.87033182870683 20.544008072726616 20 21.807353749403106 26.274923191970522 32.004757142471014 19.912965916155365 21 22.13729041093422 25.6006342856628 34.21772936544404 18.044345937958933 22 20.817003180438054 23.116649097674586 34.16637385013199 21.899973871755368 23 19.937832797253833 24.382517501419034 34.144750475263756 21.534899226063374 24 20.93106648286798 23.580830878179313 33.48433656782983 22.003766071122886 25 21.939256336099323 25.331783658134444 31.2351451919525 21.49381481381373 26 20.203259723761384 24.594066185546577 32.030344802731754 23.172329287960284 27 21.359029110468416 23.442261084232054 32.87689992882306 22.32180987647647 28 20.05045454135921 23.989873052770044 32.52335774972745 23.436314656143292 29 22.608679983061688 23.117009487255725 31.96042922399113 22.313881305691453 30 23.328558171383264 22.22504527394113 33.414240794298635 21.032155760376966 31 22.93393158003802 22.251353713364146 32.466776585488915 22.347938121108918 32 25.365660278761343 22.425782270634556 30.935301060446342 21.273256390157762 33 23.659756196448363 22.744727049940984 31.914299357605568 21.68121739600508 34 21.96934886612428 22.865097170040812 33.796253750304075 21.369300213530824 35 23.348019208764676 23.284590642484527 32.81635447919201 20.551035669558793 36 23.684803272337398 25.19303366939662 30.686452054671097 20.435711003594886 37 22.32595435665955 25.737942716076077 31.50345523510915 20.43264769215522 38 22.410285518645658 25.148345361335604 30.86052022236037 21.58084889765837 39 22.479119928642863 24.168085700642393 30.861781585894356 22.49101278482039 40 23.830941247488536 22.84095106810462 32.89185609644025 20.43625158796659 41 21.438314818318602 24.289897379066772 31.384346478543307 22.887441324071318 42 21.89835211864025 24.680379490228937 31.560216594138264 21.861051796992548 43 21.749511221630584 23.897973709580057 31.753745799208943 22.598769269580416 44 22.552999792775992 23.209089025236278 30.74952023137011 23.488390950617617 45 21.734374859222818 22.53281797623231 30.604283230171813 25.12852393437306 46 22.643097188060292 23.385499725202944 30.46805596850195 23.503347118234814 47 20.672306763611463 23.530736726401237 33.28540151904208 22.51155499094521 48 20.750691497508807 23.32441369120019 32.65616131037652 23.268733500914486 49 21.789514465136815 22.05440080727266 32.697966501788436 23.458118225802092 50 20.226324656954166 22.527051742934113 33.84616770729158 23.400455892820137 51 20.285608743051238 22.105395933003578 32.25432692740853 25.354668396536656 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 235.0 1 481.0 2 727.0 3 8489.5 4 16252.0 5 10243.5 6 4235.0 7 3999.5 8 3764.0 9 3802.5 10 3841.0 11 3772.5 12 3704.0 13 3508.0 14 3312.0 15 3120.0 16 2928.0 17 2795.0 18 2662.0 19 2545.0 20 2428.0 21 2417.0 22 2406.0 23 2584.5 24 2763.0 25 3116.5 26 3823.0 27 4176.0 28 4888.5 29 5601.0 30 6473.0 31 7345.0 32 8647.5 33 9950.0 34 11164.5 35 12379.0 36 13571.0 37 14763.0 38 16266.5 39 17770.0 40 19138.5 41 20507.0 42 22724.0 43 24941.0 44 27837.0 45 30733.0 46 41055.5 47 51378.0 48 53548.5 49 55719.0 50 55259.0 51 54799.0 52 47815.5 53 40832.0 54 36585.5 55 32339.0 56 29817.0 57 27295.0 58 25185.0 59 23075.0 60 21174.0 61 19273.0 62 17508.5 63 15744.0 64 13756.5 65 11769.0 66 9658.0 67 7547.0 68 6473.5 69 5400.0 70 4579.0 71 3758.0 72 3050.0 73 2342.0 74 1879.5 75 1055.0 76 693.0 77 508.0 78 323.0 79 247.0 80 171.0 81 137.0 82 103.0 83 76.5 84 50.0 85 35.5 86 21.0 87 13.5 88 6.0 89 5.0 90 4.0 91 3.5 92 3.0 93 1.5 94 0.0 95 0.0 96 0.0 97 1.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 554955.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.161841887459964 #Duplication Level Percentage of deduplicated Percentage of total 1 74.32821274774449 31.338143536478892 2 9.008769803014252 7.5965265607042145 3 3.799500083093213 4.805817652643011 4 2.3448206709257904 3.9544783352808386 5 1.6901741636828542 3.5630427925733192 6 1.399236569191524 3.5396634596042977 7 1.155732893203191 3.4109479255158703 8 0.991663795132316 3.3448297708709758 9 0.8277610036349371 3.1409935700275255 >10 4.3885542570395275 26.840962341505524 >50 0.037532494483341644 1.0716932373309556 >100 0.021138991136507513 1.6608334940157354 >500 0.0021570399118885216 0.6382504359326706 >1k 0.004314079823777043 3.0499239982100375 >5k 0.0 0.0 >10k+ 4.3140798237770433E-4 2.0438928893061896 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11237 2.0248488616194105 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTT 2808 0.5059869719166419 No Hit CGTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC 2410 0.43426944527033723 No Hit CGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTG 2174 0.3917434746961465 No Hit GAATCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTC 2058 0.37084087899018836 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCT 1602 0.28867205449090466 No Hit CCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 1276 0.22992855276553953 No Hit GCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGC 1244 0.22416231946734422 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCG 1120 0.20181816543683723 No Hit CGTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT 1047 0.18866394572532907 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGC 1029 0.18542043949509418 No Hit CTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCTGCT 961 0.17316719373642908 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCC 703 0.12667693776972908 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTC 687 0.1237938211206314 No Hit GAACTGTCTCTTATACACATCTGACGCGTCGTTGATCGTATGCCGTCTTCT 617 0.11118018578082907 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.6038958113720934E-4 0.0 0.0 0.18055518014974187 0.0 2 3.6038958113720934E-4 0.0 0.0 0.7463668225351605 0.0 3 3.6038958113720934E-4 0.0 0.0 1.3597498896306908 0.0 4 3.6038958113720934E-4 0.0 0.0 1.9989008117775315 0.0 5 3.6038958113720934E-4 0.0 0.0 3.815804885080772 0.0 6 3.6038958113720934E-4 0.0 0.0 5.574686235820923 0.0 7 5.40584371705814E-4 0.0 0.0 6.861817624852465 0.0 8 5.40584371705814E-4 0.0 0.0 8.403744447748016 0.0 9 5.40584371705814E-4 0.0 0.0 9.242010613473164 0.0 10 5.40584371705814E-4 0.0 0.0 10.643205304934634 0.0 11 5.40584371705814E-4 0.0 0.0 11.963852925011938 0.0 12 5.40584371705814E-4 0.0 0.0 13.17998756655945 0.0 13 5.40584371705814E-4 0.0 0.0 13.7611157661432 0.0 14 5.40584371705814E-4 0.0 0.0 14.090692038093179 0.0 15 5.40584371705814E-4 0.0 0.0 14.482075123208189 0.0 16 5.40584371705814E-4 0.0 0.0 15.067888387346722 0.0 17 5.40584371705814E-4 0.0 0.0 15.696588011640584 0.0 18 5.40584371705814E-4 0.0 0.0 16.387274643890045 0.0 19 5.40584371705814E-4 0.0 0.0 16.837761620311557 0.0 20 5.40584371705814E-4 0.0 0.0 17.28896937589534 0.0 21 5.40584371705814E-4 0.0 0.0 17.82018361849159 0.0 22 5.40584371705814E-4 0.0 0.0 18.38076961195052 0.0 23 5.40584371705814E-4 0.0 0.0 18.926579632582822 0.0 24 5.40584371705814E-4 0.0 0.0 19.379228946491157 0.0 25 5.40584371705814E-4 0.0 0.0 19.81151624906524 0.0 26 5.40584371705814E-4 0.0 0.0 20.199836022740584 0.0 27 5.40584371705814E-4 0.0 0.0 20.63122235136182 0.0 28 5.40584371705814E-4 0.0 0.0 21.03053400726185 0.0 29 5.40584371705814E-4 0.0 0.0 21.46714598480958 0.0 30 5.40584371705814E-4 0.0 0.0 22.08143002585795 0.0 31 5.40584371705814E-4 0.0 0.0 22.55930661044589 0.0 32 7.207791622744187E-4 0.0 0.0 23.071240010451298 0.0 33 7.207791622744187E-4 0.0 0.0 23.51361822129722 0.0 34 7.207791622744187E-4 0.0 0.0 23.972754547666028 0.0 35 7.207791622744187E-4 0.0 0.0 24.4659476894523 0.0 36 7.207791622744187E-4 0.0 0.0 24.922020704381435 0.0 37 9.009739528430233E-4 0.0 0.0 25.401519042084495 0.0 38 9.009739528430233E-4 0.0 0.0 25.924444324314585 0.0 39 9.009739528430233E-4 0.0 0.0 26.651350109468336 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 20 7.0301286E-4 45.000004 1 TACTAGT 20 7.0301286E-4 45.000004 2 CCGCAAT 20 7.0301286E-4 45.000004 41 CGATCGA 25 3.8881888E-5 45.0 41 CGTTTTT 4555 0.0 43.863888 1 CCATACG 60 3.6379788E-12 41.249996 2 CGTTCTG 230 0.0 41.08696 1 CGGTCTA 50 1.0786607E-9 40.5 31 CGTTTCT 325 0.0 39.46154 1 TATGGGT 110 0.0 38.86364 4 ACGGGTA 70 0.0 38.571426 5 AACGGGA 175 0.0 38.571426 4 CGATAAG 35 6.2424515E-6 38.571426 10 GTTTTTT 5360 0.0 37.94776 2 AGCACGG 90 0.0 37.5 2 TCGCAAG 30 1.1391613E-4 37.499996 1 CCGATCG 30 1.1391613E-4 37.499996 40 ACGGGTC 30 1.1391613E-4 37.499996 5 GGGCGAT 645 0.0 36.97674 7 TCACGAC 55 2.743036E-9 36.818184 25 >>END_MODULE