SRR2935471.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935471.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	173813
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGC	3436	1.9768371755852554	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCG	3206	1.8445110549843795	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTC	3172	1.8249498023738158	No Hit
GCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	1746	1.0045278546483865	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCT	699	0.4021563404348351	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGCAGACTT	694	0.3992796856391639	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTA	575	0.33081530150218913	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	572	0.3290893086247864	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTC	541	0.3112540488916249	No Hit
GAACTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCT	512	0.2945694510767319	No Hit
CCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	470	0.2704055507930937	No Hit
CTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGCT	469	0.2698302198339595	No Hit
TCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATGCCGTCTTCTGC	274	0.1576406828027823	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGGCAGACTTCGTATG	174	0.10010758688935809	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGGTC	25	3.8771068E-5	45.000004	6
AAGCATA	25	3.8771068E-5	45.000004	25
GTCCGGG	25	3.8771068E-5	45.000004	3
CGAGCAC	50	2.1827873E-11	45.000004	34
GAACCGT	25	3.8771068E-5	45.000004	36
CGTCCTA	25	3.8771068E-5	45.000004	40
TCACGGG	40	6.7575456E-9	45.0	3
TCACGAC	20	7.0167525E-4	45.0	25
ACAACGG	20	7.0167525E-4	45.0	2
CTCACGA	20	7.0167525E-4	45.0	24
TCGGGGT	20	7.0167525E-4	45.0	5
AACGGGC	20	7.0167525E-4	45.0	4
CCATCGA	40	6.7575456E-9	45.0	41
CGAATGC	40	6.7575456E-9	45.0	45
CCCATCG	45	3.8016879E-10	45.0	40
ATCGAGG	20	7.0167525E-4	45.0	2
ATCGAAT	40	6.7575456E-9	45.0	43
CCCTCGA	30	2.154844E-6	44.999996	41
GGATCCT	30	2.154844E-6	44.999996	8
GCATTCT	30	2.154844E-6	44.999996	9