##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935470.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 286874 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.0904369165557 31.0 30.0 33.0 28.0 34.0 2 31.10599078341014 31.0 31.0 34.0 28.0 34.0 3 30.921062905665902 31.0 30.0 34.0 27.0 34.0 4 34.75871637025314 35.0 35.0 37.0 32.0 37.0 5 34.745247042255485 35.0 35.0 37.0 32.0 37.0 6 34.92457315755349 36.0 35.0 37.0 32.0 37.0 7 35.29207247781256 37.0 35.0 37.0 33.0 37.0 8 34.93293571393713 37.0 35.0 37.0 32.0 37.0 9 36.70942295223687 39.0 37.0 39.0 32.0 39.0 10 36.17132260156027 37.0 35.0 39.0 32.0 39.0 11 36.551583622077985 38.0 35.0 39.0 32.0 39.0 12 36.68206599412983 39.0 35.0 39.0 32.0 39.0 13 36.67283546086435 39.0 35.0 39.0 32.0 39.0 14 37.75008888919874 39.0 37.0 41.0 33.0 41.0 15 37.88035862434379 40.0 37.0 41.0 33.0 41.0 16 37.92170778808815 39.0 37.0 41.0 33.0 41.0 17 37.72576810725266 39.0 36.0 41.0 33.0 41.0 18 37.720961118818714 39.0 36.0 41.0 33.0 41.0 19 37.58659550882966 39.0 36.0 40.0 33.0 41.0 20 37.414331727518004 39.0 35.0 41.0 32.0 41.0 21 37.51123141169991 39.0 36.0 41.0 33.0 41.0 22 37.62277864149417 39.0 36.0 41.0 33.0 41.0 23 37.591625591723194 39.0 36.0 41.0 33.0 41.0 24 37.649337339738004 40.0 36.0 41.0 33.0 41.0 25 37.32160112104966 39.0 35.0 41.0 32.0 41.0 26 37.28506243159018 39.0 35.0 41.0 32.0 41.0 27 37.24614290594477 39.0 35.0 41.0 32.0 41.0 28 37.11902438004141 39.0 35.0 41.0 32.0 41.0 29 37.06958455628604 39.0 35.0 41.0 31.0 41.0 30 36.830737536339996 39.0 35.0 41.0 31.0 41.0 31 36.82214839964584 39.0 35.0 41.0 31.0 41.0 32 36.709924914770944 39.0 35.0 41.0 31.0 41.0 33 36.54069382376932 39.0 35.0 41.0 30.0 41.0 34 36.312196295237634 39.0 35.0 41.0 30.0 41.0 35 36.35224872243563 39.0 35.0 41.0 30.0 41.0 36 36.18188124403048 39.0 35.0 41.0 29.0 41.0 37 36.14409113408674 39.0 35.0 41.0 29.0 41.0 38 35.985523261083266 39.0 35.0 41.0 28.0 41.0 39 35.86163263314208 39.0 35.0 41.0 27.0 41.0 40 35.71646785696856 39.0 35.0 41.0 26.0 41.0 41 35.579048641563894 39.0 35.0 40.0 26.0 41.0 42 35.668837189846414 39.0 35.0 41.0 26.0 41.0 43 35.65565021577417 39.0 35.0 40.0 27.0 41.0 44 35.71238941137921 39.0 35.0 40.0 27.0 41.0 45 35.76498044437628 39.0 35.0 40.0 27.0 41.0 46 35.61618341153259 39.0 35.0 40.0 27.0 41.0 47 35.438363183836806 38.0 35.0 40.0 26.0 41.0 48 35.463653032341725 38.0 35.0 40.0 26.0 41.0 49 35.44768434922649 38.0 35.0 40.0 26.0 41.0 50 35.29924984487963 38.0 35.0 40.0 26.0 41.0 51 34.11063393685033 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 4.0 9 7.0 10 14.0 11 14.0 12 11.0 13 7.0 14 17.0 15 14.0 16 29.0 17 59.0 18 151.0 19 363.0 20 712.0 21 1192.0 22 1707.0 23 2112.0 24 2599.0 25 3145.0 26 3594.0 27 3849.0 28 3939.0 29 4268.0 30 4909.0 31 6288.0 32 8423.0 33 11338.0 34 18698.0 35 21515.0 36 23665.0 37 34782.0 38 60988.0 39 68450.0 40 11.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 46.95371487133724 19.110480559409357 21.135062780175268 12.800741789078133 2 33.37249105879236 29.07408827568898 21.892886772590057 15.660533892928601 3 29.902675042004507 28.91548205832526 26.38684579292651 14.794997106743727 4 26.270418371828747 22.775155643244073 33.23096551099089 17.723460473936292 5 28.720274406185293 27.348243479715833 24.766273695071703 19.16520841902717 6 22.276330375007845 37.398997469272224 26.26030940412864 14.064362751591291 7 71.4860879689341 5.947558858592971 17.730083590705327 4.836269581767605 8 71.19362507581725 10.939994562072547 12.325620307173184 5.54076005493701 9 65.77417263328151 7.167258099374639 13.711594637366927 13.346974629976923 10 38.26697435110885 23.00452463450853 23.02962276121224 15.698878253170381 11 31.15235260079338 24.543876405669387 25.31459804652914 18.989172947008093 12 25.08662339563711 20.573143610086657 30.58102163319088 23.759211361085356 13 25.989110201691336 22.32687521350837 33.58164211465661 18.10237247014369 14 19.462900088540614 30.420323905268514 29.428947900471986 20.687828105718886 15 17.81444118323724 25.203050816734873 35.938774514246674 21.043733485781214 16 20.003904153042797 25.32366125894992 30.626337695294797 24.04609689271248 17 20.35946094801202 26.656999240084495 30.0107364208677 22.972803391035786 18 20.93567210691802 25.172375328541452 30.121935065568856 23.770017498971676 19 21.124256642288948 27.211598123217858 27.71007480636098 23.954070428132212 20 24.420128697616374 25.670852011684573 30.789475518868908 19.11954377183014 21 22.141079358882294 29.471823866924158 30.172131318976277 18.21496545521727 22 20.03004803502583 24.2440932255973 31.71740903671995 24.008449702656915 23 21.3386364745498 27.40436567970607 29.72141079358882 21.535587052155304 24 21.805740499313288 25.519217496182993 29.272781778760017 23.402260225743706 25 20.26499438778 30.6165773126878 26.936215899663267 22.18221239986893 26 19.274664138262793 26.63782705996361 30.874878866680145 23.212629935093457 27 24.134637506361678 26.679308686043353 27.484540251120706 21.70151355647427 28 20.174710848665267 27.807330047337857 30.589736260518556 21.428222843478324 29 22.344304468163724 26.218130607862683 29.58894845820813 21.84861646576546 30 23.346486610846572 28.73247488444404 27.736567273437117 20.184471231272266 31 25.19607911487273 26.578219009042297 24.85864874474508 23.36705313133989 32 28.136742960324046 28.22946659509053 24.99215683540509 18.641633609180335 33 25.218039975738478 27.10318815926156 24.933594539763103 22.745177325236863 34 22.994067081715315 29.402804018488954 26.203490033952185 21.39963886584354 35 26.422052887330327 26.267629691083886 25.144837106185992 22.16548031539979 36 23.305702154953046 30.24254550778391 24.518778278965677 21.932974058297372 37 25.267887644052788 26.82153140403104 27.159658944344905 20.75092200757127 38 24.138820527478963 27.42981239150289 24.275814469070045 24.155552611948103 39 24.458124472765046 27.997657508174324 25.28949991982543 22.254718099235205 40 23.561215028200532 26.061964486150714 28.336133633581294 22.04068685206746 41 20.540028026241487 28.53238704100058 25.93403375698042 24.99355117577752 42 24.276163054163153 25.208976763317693 28.170207129262327 22.34465305325683 43 23.937338343663072 25.39058959682648 25.95390310728752 24.71816895222293 44 23.21925305186249 25.144837106185992 27.37717604244372 24.258733799507798 45 22.83720378981713 24.102219092702722 26.440179312171896 26.620397805308254 46 24.833899203134475 27.53403933434191 25.61507839678744 22.016983065736177 47 21.24347274413157 26.190940970600334 31.01291856355055 21.552667721717548 48 22.676854646987877 25.411853287506013 27.273297684697813 24.637994380808298 49 22.490710207268698 23.45524515989598 31.0303478182059 23.023696814629417 50 21.645739941577137 24.007055362284486 29.449863006058408 24.897341690079966 51 21.292971827352776 23.927577961056073 27.226587282221466 27.552862929369688 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 80.0 1 212.5 2 345.0 3 2009.5 4 3674.0 5 2451.0 6 1228.0 7 1143.5 8 1059.0 9 1052.5 10 1046.0 11 1031.5 12 1017.0 13 945.0 14 873.0 15 898.5 16 924.0 17 903.5 18 883.0 19 879.5 20 876.0 21 934.0 22 992.0 23 1019.0 24 1046.0 25 1262.0 26 1835.5 27 2193.0 28 2650.5 29 3108.0 30 3577.5 31 4047.0 32 4868.0 33 5689.0 34 6271.0 35 6853.0 36 7273.5 37 7694.0 38 8678.5 39 9663.0 40 10701.5 41 11740.0 42 12706.5 43 13673.0 44 14892.5 45 16112.0 46 17584.5 47 19057.0 48 28934.5 49 38812.0 50 33734.0 51 28656.0 52 28018.0 53 27380.0 54 23365.0 55 19350.0 56 17034.0 57 14718.0 58 13318.0 59 11918.0 60 10934.5 61 9951.0 62 8880.5 63 7810.0 64 6458.5 65 5107.0 66 3981.5 67 2856.0 68 2367.0 69 1878.0 70 1539.0 71 1200.0 72 1027.5 73 855.0 74 672.5 75 390.0 76 290.0 77 212.5 78 135.0 79 85.0 80 35.0 81 48.0 82 61.0 83 38.5 84 16.0 85 8.5 86 1.0 87 2.0 88 3.0 89 2.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 286874.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 44.75610152318901 #Duplication Level Percentage of deduplicated Percentage of total 1 75.78759250119805 33.919571841816975 2 8.972411031243851 8.031402780442615 3 3.6962492236259346 4.962891165228326 4 2.370938890219494 4.24455926703763 5 1.7119463484630542 3.831002228703258 6 1.2587692982921812 3.380256390518295 7 1.0453621751599658 3.275043494797278 8 0.8315288156040576 2.977279047250585 9 0.7051423783960028 2.840348148821501 >10 3.5560979776804036 22.979150311469915 >50 0.039780845926421726 1.252937900567059 >100 0.014040298562266492 1.133543985272009 >500 0.00546011610754808 1.5744636198265356 >1k 0.004680099520755498 5.597549818248042 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTC 4479 1.561312632026604 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGC 3347 1.1667143066293912 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCG 3252 1.1335987227842188 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2288 0.7975626930289952 No Hit GCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 1633 0.5692394570438589 Illumina PCR Primer Index 8 (95% over 23bp) GAATGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTT 1035 0.3607855713658261 No Hit GAACTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCT 895 0.31198365833083513 Illumina PCR Primer Index 8 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCT 735 0.2562100434337026 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGGGAAGCT 658 0.22936899126445756 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTC 609 0.2122883217022107 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTA 558 0.19451048195374973 No Hit CTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGCT 543 0.18928170555714355 Illumina PCR Primer Index 8 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTGC 512 0.17847556767082412 Illumina PCR Primer Index 8 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCAGGGAAGCTCGTATGCCGTCTTCTG 484 0.16871518506382593 Illumina PCR Primer Index 8 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.19939067325724882 0.0 2 0.0 0.0 0.0 1.1304614569462552 0.0 3 3.4858509310707836E-4 0.0 0.0 1.5365630904160015 0.0 4 3.4858509310707836E-4 0.0 0.0 2.290204061713505 0.0 5 3.4858509310707836E-4 0.0 0.0 4.949559737027406 0.0 6 3.4858509310707836E-4 0.0 0.0 6.154966988991683 0.0 7 3.4858509310707836E-4 0.0 0.0 7.099981176404972 0.0 8 3.4858509310707836E-4 0.0 0.0 8.35907053270774 0.0 9 3.4858509310707836E-4 0.0 0.0 8.756108953756701 0.0 10 3.4858509310707836E-4 0.0 0.0 10.800909109922824 0.0 11 3.4858509310707836E-4 0.0 0.0 12.069758848832588 0.0 12 3.4858509310707836E-4 0.0 0.0 14.252250116776006 0.0 13 6.971701862141567E-4 0.0 0.0 14.824626839657828 0.0 14 0.0010457552793212352 0.0 0.0 15.079093957625997 0.0 15 0.0010457552793212352 0.0 0.0 15.61556641591779 0.0 16 0.0010457552793212352 0.0 0.0 16.35874983442208 0.0 17 0.0010457552793212352 0.0 0.0 17.20616019576539 0.0 18 0.0010457552793212352 0.0 0.0 18.06995405648473 0.0 19 0.0010457552793212352 0.0 0.0 18.823595027782233 0.0 20 0.0010457552793212352 0.0 0.0 19.38481702768463 0.0 21 0.0010457552793212352 0.0 0.0 20.02412208844301 0.0 22 0.0010457552793212352 0.0 0.0 20.73418992310213 0.0 23 0.0010457552793212352 0.0 0.0 21.428571428571427 0.0 24 0.0010457552793212352 0.0 0.0 21.951797653325155 0.0 25 0.0010457552793212352 0.0 0.0 22.473280952613344 0.0 26 0.0013943403724283134 0.0 0.0 22.994764251901533 0.0 27 0.0013943403724283134 0.0 0.0 23.519384817027685 0.0 28 0.001742925465535392 0.0 0.0 23.992763373467096 0.0 29 0.001742925465535392 0.0 0.0 24.44801550506494 0.0 30 0.001742925465535392 0.0 0.0 25.00052287763966 0.0 31 0.001742925465535392 0.0 0.0 25.492376444013747 0.0 32 0.0020915105586424704 0.0 0.0 25.989110201691336 0.0 33 0.0020915105586424704 0.0 0.0 26.50048453327942 0.0 34 0.0020915105586424704 0.0 0.0 27.001052726981182 0.0 35 0.0020915105586424704 0.0 0.0 27.47861430453788 0.0 36 0.0020915105586424704 0.0 0.0 27.995914582708785 0.0 37 0.0020915105586424704 0.0 0.0 28.483585127965586 0.0 38 0.0020915105586424704 0.0 0.0 28.959055194963643 0.0 39 0.0020915105586424704 0.0 0.0 29.446377155127337 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGCGAA 80 0.0 45.000004 31 CGACGGT 35 1.2076634E-7 45.000004 28 CGAATAT 20 7.024425E-4 45.000004 14 GTACGAG 20 7.024425E-4 45.000004 1 CACAACG 45 3.8198777E-10 45.0 12 TACACGG 25 3.8834634E-5 45.0 2 GGCGATA 110 0.0 42.954548 8 CGTTTTT 1135 0.0 42.81938 1 CCGATGA 630 0.0 42.5 18 CGATGAA 640 0.0 42.187504 19 CGGAAGG 55 6.002665E-11 40.909092 2 GGGACCG 105 0.0 40.714287 7 ACAACGA 50 1.0750227E-9 40.5 13 CGGGTAT 50 1.0750227E-9 40.5 6 CGAACAC 50 1.0750227E-9 40.5 34 CGCTCGA 50 1.0750227E-9 40.5 41 ACCGATG 675 0.0 40.333332 17 GATGAAT 680 0.0 40.036762 20 GTGCAAG 45 1.9195795E-8 40.0 1 CTCGAAT 85 0.0 39.705883 43 >>END_MODULE