##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935469.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 447675 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.06345004746747 31.0 30.0 33.0 28.0 34.0 2 31.053391411179984 31.0 31.0 34.0 28.0 34.0 3 30.93376668341989 31.0 30.0 34.0 28.0 34.0 4 34.86536214888033 35.0 35.0 37.0 32.0 37.0 5 34.746898978053274 35.0 35.0 37.0 32.0 37.0 6 34.865183447813706 35.0 35.0 37.0 32.0 37.0 7 35.26198023119451 36.0 35.0 37.0 33.0 37.0 8 34.67489138325794 37.0 35.0 37.0 31.0 37.0 9 36.3769363935891 39.0 35.0 39.0 32.0 39.0 10 36.035961355894344 37.0 35.0 39.0 32.0 39.0 11 36.417707041938904 37.0 35.0 39.0 32.0 39.0 12 36.54482604568046 38.0 35.0 39.0 32.0 39.0 13 36.43972524711007 39.0 35.0 39.0 32.0 39.0 14 37.567416094264814 39.0 36.0 41.0 32.0 41.0 15 37.564165968615626 39.0 36.0 41.0 32.0 41.0 16 37.79424582565477 39.0 36.0 41.0 33.0 41.0 17 37.45000725973083 39.0 36.0 41.0 32.0 41.0 18 37.552771541855144 39.0 36.0 40.0 32.0 41.0 19 37.46571284972357 39.0 36.0 40.0 32.0 41.0 20 37.08138716702965 39.0 35.0 40.0 31.0 41.0 21 37.48036186965991 39.0 36.0 41.0 32.0 41.0 22 37.506378511196736 39.0 36.0 41.0 32.0 41.0 23 37.407963366281344 39.0 36.0 41.0 32.0 41.0 24 37.40428659183559 39.0 35.0 41.0 32.0 41.0 25 37.31206120511532 39.0 35.0 41.0 32.0 41.0 26 37.11971631205674 39.0 35.0 41.0 31.0 41.0 27 37.024678617300495 39.0 35.0 41.0 31.0 41.0 28 36.93509353883956 39.0 35.0 41.0 31.0 41.0 29 36.84238119171274 39.0 35.0 41.0 30.0 41.0 30 36.63585190149104 39.0 35.0 41.0 30.0 41.0 31 36.59628078405093 39.0 35.0 40.0 30.0 41.0 32 36.28180488077288 39.0 35.0 40.0 30.0 41.0 33 36.339565533031774 39.0 35.0 41.0 30.0 41.0 34 36.18723404255319 39.0 35.0 41.0 29.0 41.0 35 36.113604735578264 39.0 35.0 41.0 29.0 41.0 36 36.17577930418272 39.0 35.0 41.0 29.0 41.0 37 36.056326576199254 39.0 35.0 41.0 28.0 41.0 38 35.75265091863517 39.0 35.0 41.0 27.0 41.0 39 35.72088680404311 39.0 35.0 40.0 27.0 41.0 40 35.653690735466576 39.0 35.0 40.0 26.0 41.0 41 35.71329871000167 39.0 35.0 40.0 26.0 41.0 42 35.76342659295248 39.0 35.0 40.0 27.0 41.0 43 35.7446853185905 39.0 35.0 40.0 27.0 41.0 44 35.78022896074161 39.0 35.0 40.0 27.0 41.0 45 35.840699167923155 39.0 35.0 40.0 27.0 41.0 46 35.69872563801865 39.0 35.0 40.0 27.0 41.0 47 35.37769140559558 38.0 35.0 40.0 26.0 41.0 48 35.46249623052437 38.0 35.0 40.0 26.0 41.0 49 35.56264924331267 38.0 35.0 40.0 27.0 41.0 50 35.36729547104484 38.0 35.0 40.0 26.0 41.0 51 34.269023286982744 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 2.0 8 11.0 9 17.0 10 22.0 11 14.0 12 11.0 13 15.0 14 20.0 15 20.0 16 34.0 17 76.0 18 170.0 19 355.0 20 821.0 21 1789.0 22 3308.0 23 4600.0 24 5294.0 25 5332.0 26 5376.0 27 5292.0 28 5438.0 29 6339.0 30 8003.0 31 10680.0 32 13928.0 33 18868.0 34 29650.0 35 33873.0 36 37506.0 37 54521.0 38 93039.0 39 103234.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 53.09767130172558 17.375998212989334 18.793991176634837 10.732339308650248 2 28.409225442564363 35.75205227006199 20.335734628916065 15.502987658457586 3 27.287652873178086 35.55637460211091 22.755570447311108 14.4004020773999 4 25.256491874685878 20.652482269503547 37.242865918355946 16.848159937454625 5 32.80259116546602 25.631987490925333 21.693192606243368 19.872228737365276 6 20.817334003462335 42.42050594739487 23.770145753057463 12.99201429608533 7 67.12950242921762 5.6976601329089185 22.32758139275144 4.845256045122019 8 64.1697660132909 17.22588931702686 12.116825822304127 6.487518847378121 9 59.21349193052996 7.4478137041380466 12.650918635170605 20.68777573016139 10 40.33975540291506 20.45278382755347 22.32914502708438 16.878315742447086 11 32.91383257943821 21.884626123862176 24.70296532082426 20.498575975875355 12 24.834087228458145 18.422739710727647 30.0371921594907 26.705980901323507 13 26.08365443681242 20.87340146311498 35.19294130786843 17.850002792204165 14 19.44021890880661 32.12241023063606 26.22237113977774 22.21499972077958 15 16.305355447590326 23.33902942983191 37.31948400067013 23.036131121907633 16 17.934662422516332 24.339308650248505 27.747808119729715 29.978220807505444 17 17.71061596023901 28.277210029597367 30.678282235997095 23.333891774166528 18 18.44842798905456 24.85575473278606 29.57726028927235 27.118556988887025 19 19.252806165186797 26.50628245937343 26.43658904339085 27.80432233204892 20 24.305578823923604 25.275032110347905 32.36767744457475 18.05171162115374 21 20.83542748645781 33.01301167141341 27.85502875970291 18.296532082425866 22 18.291841179427042 22.698386105992068 32.3770592505724 26.63271346400849 23 22.51588764170436 28.275423018931146 28.951583179762103 20.25710615960239 24 22.37538392807282 26.2862567710951 25.941363712514658 25.396995588317417 25 18.31149829675546 35.25660356285252 24.208186742614622 22.223711397777404 26 18.30792427542302 24.655386161836155 31.52934606578433 25.507343496956498 27 24.99558831741777 26.489082481711062 25.02038309041157 23.494946110459598 28 16.508181158206288 30.387446250069804 30.280672362763166 22.823700228960742 29 20.19299715195175 27.498296755458757 28.82381191712738 23.48489417546211 30 18.16272965879265 30.562349919026076 27.85770927570224 23.41721114647903 31 20.374155358239797 28.663204333500865 22.411347517730494 28.551292790528844 32 23.916904004020775 31.693974423409838 23.139107611548557 21.25001396102083 33 21.052996035070084 23.99195845200201 26.194449098118056 28.760596414809854 34 19.82129893337801 27.18311274920422 24.705869213156866 28.289719104260904 35 20.379069637571902 23.406935835148264 23.833808008041547 32.380186519238286 36 17.820740492544815 32.87853911878037 23.334115150499805 25.966605238175017 37 17.47964483163009 27.258837326185294 27.260400960518233 28.001116881666388 38 17.632210867258614 28.32076841458647 25.266543809683363 28.78047690847155 39 20.70117831015804 27.93410398168314 25.144580331713858 26.220137376444963 40 18.594962863684593 21.95007538951248 30.96152342659295 28.493438320209975 41 16.67437315016474 25.4854526162953 24.234321773608087 33.60585245993187 42 18.306360641090077 24.1300050259675 29.09588429105936 28.46775004188306 43 21.418663092645335 24.581671971854583 24.32300217791925 29.676662757580836 44 20.523817501535714 23.10917518288937 28.34757357457977 28.019433740995144 45 18.89875467694198 22.39325403473502 27.028759702909475 31.679231585413525 46 25.377338470988995 27.112079075221978 24.785614564136928 22.724967889652092 47 16.735354889149495 24.769308091807673 34.9541520075948 23.541185011448036 48 19.78310158038756 25.8596079745351 25.90137934885799 28.455911096219356 49 18.68051599932987 21.971072764840567 33.73384709889987 25.61456413692969 50 20.516669458870833 21.741888646897863 30.02736360082649 27.714078293404814 51 19.090411570894066 21.74010163623164 26.595409616351144 32.57407717652315 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 144.0 1 361.5 2 579.0 3 2039.0 4 3499.0 5 2310.5 6 1122.0 7 1079.5 8 1037.0 9 978.0 10 919.0 11 913.5 12 908.0 13 872.0 14 836.0 15 890.0 16 944.0 17 903.5 18 863.0 19 943.0 20 1023.0 21 1162.0 22 1301.0 23 1445.0 24 1589.0 25 1768.5 26 2635.0 27 3322.0 28 3923.0 29 4524.0 30 5196.5 31 5869.0 32 7015.5 33 8162.0 34 9068.0 35 9974.0 36 10429.5 37 10885.0 38 12470.0 39 14055.0 40 16078.5 41 18102.0 42 19769.0 43 21436.0 44 23401.0 45 25366.0 46 52892.5 47 80419.0 48 62440.5 49 44462.0 50 43490.0 51 42518.0 52 36164.0 53 29810.0 54 26860.5 55 23911.0 56 22711.5 57 21512.0 58 19607.0 59 17702.0 60 16319.0 61 14936.0 62 13312.0 63 11688.0 64 9765.5 65 7843.0 66 6598.5 67 5354.0 68 4380.5 69 3407.0 70 2878.5 71 2350.0 72 1919.5 73 1489.0 74 1192.0 75 700.5 76 506.0 77 368.0 78 230.0 79 174.0 80 118.0 81 101.0 82 84.0 83 48.0 84 12.0 85 9.0 86 6.0 87 4.0 88 2.0 89 2.5 90 3.0 91 4.5 92 6.0 93 4.0 94 2.0 95 1.5 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 447675.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.88689328209802 #Duplication Level Percentage of deduplicated Percentage of total 1 73.35664424069516 25.59185419157962 2 9.564699143171097 6.673652765663689 3 3.784870377930323 3.9612710688428754 4 2.1480060183143834 2.997490269209527 5 1.5361883405020693 2.6796419348149474 6 1.2021495544034848 2.5163557928157636 7 1.0739212824804814 2.6226044022689274 8 0.9290491890325027 2.5929311929277303 9 0.8705310313822427 2.733311087152832 >10 5.424474337933152 30.115485603650477 >50 0.05959122214359754 1.4229526705717965 >100 0.03951157120390707 2.4400576364672477 >500 0.0032386533773694315 0.8428796984647928 >1k 0.00518184540379109 4.333260347925165 >5k 0.0 0.0 >10k+ 0.001943192026421659 8.476251337644605 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTC 13410 2.995476629251131 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGC 12160 2.7162562126542693 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCG 11940 2.6671134193332215 No Hit GCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 4383 0.9790584687552353 TruSeq Adapter, Index 19 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCT 2664 0.5950745518512314 No Hit GAATGACTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCT 2555 0.570726531523985 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACAATCCCT 2239 0.5001396102082984 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2094 0.4677500418830625 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTC 2015 0.45010331155414085 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACAATCCCTCGTA 1865 0.4165968615625175 No Hit GAATGATACGGCGACCACCGATGAATGATACGGCGACCACCCCTCGAATGC 1361 0.30401518959066287 No Hit CTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGCT 914 0.20416596861562517 TruSeq Adapter, Index 13 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTGC 913 0.2039425922823477 TruSeq Adapter, Index 19 (95% over 21bp) GAATGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTT 823 0.18383872228737366 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATG 549 0.1226336069693416 No Hit CGCTGTCTCTTATACACATCTGACGCACAATCCCTCGTATGCCGTCTTCTG 531 0.11861283297034679 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACAATCCCTCGT 497 0.11101803763891216 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCACAATCCC 461 0.10297648964092254 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.93505333109957E-4 0.0 0.0 0.21555816161277713 0.0 2 8.93505333109957E-4 0.0 0.0 1.5808343106047915 0.0 3 8.93505333109957E-4 0.0 0.0 1.9337689171832244 0.0 4 8.93505333109957E-4 0.0 0.0 2.9309208689339363 0.0 5 8.93505333109957E-4 0.0 0.0 7.017144133579047 0.0 6 8.93505333109957E-4 0.0 0.0 7.878036522030491 0.0 7 8.93505333109957E-4 0.0 0.0 9.086055732395153 0.0 8 8.93505333109957E-4 0.0 0.0 10.467414977383147 0.0 9 8.93505333109957E-4 0.0 0.0 10.81498855196292 0.0 10 8.93505333109957E-4 0.0 0.0 14.367119003741553 0.0 11 8.93505333109957E-4 0.0 0.0 15.554140838778132 0.0 12 8.93505333109957E-4 0.0 0.0 19.30887362483945 0.0 13 8.93505333109957E-4 0.0 0.0 19.89590662869269 0.0 14 8.93505333109957E-4 0.0 0.0 20.1726699056235 0.0 15 8.93505333109957E-4 0.0 0.0 20.94130786843134 0.0 16 8.93505333109957E-4 0.0 0.0 21.711732841905402 0.0 17 8.93505333109957E-4 0.0 0.0 22.474563020048027 0.0 18 0.0011168816663874462 0.0 0.0 23.26687887418328 0.0 19 0.0011168816663874462 0.0 0.0 24.308035963589656 0.0 20 0.0011168816663874462 0.0 0.0 24.8861339141118 0.0 21 0.0011168816663874462 0.0 0.0 25.457530574635616 0.0 22 0.0011168816663874462 0.0 0.0 26.161612777126262 0.0 23 0.0013402579996649355 0.0 0.0 26.77210029597364 0.0 24 0.0013402579996649355 0.0 0.0 27.26888926118278 0.0 25 0.0013402579996649355 0.0 0.0 27.696878315742445 0.0 26 0.0013402579996649355 0.0 0.0 28.120399843636566 0.0 27 0.0013402579996649355 0.0 0.0 28.637292678840677 0.0 28 0.0015636343329424247 0.0 0.0 29.059473948735132 0.0 29 0.0015636343329424247 0.0 0.0 29.47137990729882 0.0 30 0.0015636343329424247 0.0 0.0 29.95834031384375 0.0 31 0.0015636343329424247 0.0 0.0 30.41715530239571 0.0 32 0.0015636343329424247 0.0 0.0 30.85139889428715 0.0 33 0.0015636343329424247 0.0 0.0 31.270229519182443 0.0 34 0.0015636343329424247 0.0 0.0 31.68414586474563 0.0 35 0.0015636343329424247 0.0 0.0 32.12978164963422 0.0 36 0.0015636343329424247 0.0 0.0 32.53565644719942 0.0 37 0.0015636343329424247 0.0 0.0 32.97794158708885 0.0 38 0.0015636343329424247 0.0 0.0 33.40146311498297 0.0 39 0.0015636343329424247 0.0 0.0 33.809124923214384 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAC 20 7.028667E-4 45.0 25 GTACCGG 20 7.028667E-4 45.0 2 TCCGCAC 20 7.028667E-4 45.0 16 GATCGCC 20 7.028667E-4 45.0 38 ATTACGG 25 3.8869763E-5 45.0 2 TAGCACG 20 7.028667E-4 45.0 1 CCCGTAA 40 6.7993824E-9 45.0 41 CGGCTAT 20 7.028667E-4 45.0 31 CGGTCTA 20 7.028667E-4 45.0 31 CGTCATA 45 3.8380676E-10 45.0 38 CTAGGCG 20 7.028667E-4 45.0 1 GCGTAAG 20 7.028667E-4 45.0 1 GCGAGCC 20 7.028667E-4 45.0 33 CGTTCAT 30 2.162522E-6 44.999996 17 CCCCGTA 60 0.0 44.999996 40 TTCGCGG 30 2.162522E-6 44.999996 2 CGATGAA 1630 0.0 43.757668 19 CCGATGA 1625 0.0 43.47692 18 CTCGAAT 285 0.0 43.421047 43 TCGAATG 255 0.0 43.235294 44 >>END_MODULE