##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935465.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 504397 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.193375456237845 31.0 31.0 33.0 28.0 34.0 2 31.21146041709209 31.0 31.0 34.0 28.0 34.0 3 30.992329454774712 31.0 31.0 34.0 27.0 34.0 4 34.82029433164749 35.0 35.0 37.0 32.0 37.0 5 34.841271855304456 35.0 35.0 37.0 33.0 37.0 6 35.02805726441672 36.0 35.0 37.0 32.0 37.0 7 35.44620804643961 37.0 35.0 37.0 33.0 37.0 8 35.189382569682216 37.0 35.0 37.0 32.0 37.0 9 37.07311106132669 39.0 37.0 39.0 33.0 39.0 10 36.334095960126646 37.0 35.0 39.0 32.0 39.0 11 36.64893922842523 38.0 35.0 39.0 32.0 39.0 12 36.75645176319447 39.0 35.0 39.0 33.0 39.0 13 36.79230050932103 39.0 35.0 39.0 33.0 39.0 14 37.775226656780276 40.0 37.0 41.0 33.0 41.0 15 37.970891975963376 40.0 37.0 41.0 33.0 41.0 16 37.961988275108695 40.0 37.0 41.0 33.0 41.0 17 37.868169319008636 39.0 37.0 41.0 33.0 41.0 18 37.84793723991221 39.0 37.0 41.0 33.0 41.0 19 37.70842808343428 39.0 37.0 41.0 33.0 41.0 20 37.71435397117747 39.0 36.0 41.0 33.0 41.0 21 37.70122542362464 39.0 36.0 41.0 33.0 41.0 22 37.818914466184374 39.0 36.0 41.0 33.0 41.0 23 37.87891284048081 40.0 36.0 41.0 34.0 41.0 24 37.863177219531444 40.0 36.0 41.0 33.0 41.0 25 37.4784742970319 39.0 35.0 41.0 33.0 41.0 26 37.55291367712338 39.0 35.0 41.0 33.0 41.0 27 37.598114183867075 39.0 36.0 41.0 33.0 41.0 28 37.49522300886009 39.0 35.0 41.0 33.0 41.0 29 37.47743939793456 40.0 35.0 41.0 33.0 41.0 30 37.19350234041836 39.0 35.0 41.0 32.0 41.0 31 37.16845857528891 39.0 35.0 41.0 32.0 41.0 32 37.116977301609644 39.0 35.0 41.0 32.0 41.0 33 37.067595564604865 39.0 35.0 41.0 32.0 41.0 34 36.88856198589603 39.0 35.0 41.0 31.0 41.0 35 36.90719611734408 40.0 35.0 41.0 31.0 41.0 36 36.74722688675785 39.0 35.0 41.0 31.0 41.0 37 36.75529592761257 39.0 35.0 41.0 31.0 41.0 38 36.59042976068454 39.0 35.0 41.0 31.0 41.0 39 36.48604373142584 39.0 35.0 41.0 30.0 41.0 40 36.37731984924573 39.0 35.0 41.0 30.0 41.0 41 36.20301468882646 39.0 35.0 41.0 30.0 41.0 42 36.26241829352673 39.0 35.0 41.0 30.0 41.0 43 36.246407095997796 39.0 35.0 41.0 30.0 41.0 44 36.28371699276562 39.0 35.0 41.0 30.0 41.0 45 36.27879230050932 39.0 35.0 41.0 30.0 41.0 46 36.15175942759374 39.0 35.0 41.0 30.0 41.0 47 36.088485855387724 39.0 35.0 41.0 30.0 41.0 48 36.03429044978459 39.0 35.0 40.0 29.0 41.0 49 36.02468690337175 39.0 35.0 40.0 29.0 41.0 50 35.90738446104953 39.0 35.0 40.0 29.0 41.0 51 34.679694764243244 37.0 34.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 6.0 8 15.0 9 25.0 10 25.0 11 25.0 12 21.0 13 18.0 14 22.0 15 20.0 16 57.0 17 101.0 18 179.0 19 334.0 20 638.0 21 1088.0 22 1671.0 23 2322.0 24 3197.0 25 4202.0 26 5324.0 27 5830.0 28 5905.0 29 6754.0 30 8071.0 31 10528.0 32 14245.0 33 20102.0 34 34177.0 35 36490.0 36 40502.0 37 62577.0 38 111353.0 39 128557.0 40 16.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 44.073418358951386 20.144053196192683 23.418458079647582 12.364070365208358 2 35.439941157461284 24.316163656802082 23.618102407429067 16.625792778307563 3 31.881038150504466 24.741225661532486 27.4569436376505 15.920792550312552 4 27.668285100823358 24.37207199884218 29.149261395289823 18.81038150504464 5 25.80923359972403 29.04160809838282 25.9581242552989 19.19103404659425 6 23.848079984615293 35.16733842588279 26.670459974980027 14.314121614521893 7 76.48697355456119 5.8497572348764955 13.091275324793763 4.571993885768552 8 76.95565199634416 7.065664545982629 11.01215907311106 4.9665243845621605 9 70.95839190161718 7.284341500841599 12.881916426941476 8.875350170599745 10 38.956813779622 23.521749732849322 22.03205015097235 15.489386336556324 11 30.261084027065984 24.391501138983777 26.044564103275793 19.302850730674447 12 26.443654502306714 21.21701754768565 31.091382383321076 21.247945566686557 13 25.569739708999062 22.75945336708981 33.21272727633194 18.45807964757919 14 21.268365989488437 26.258086388301276 32.279533779939214 20.19401384227107 15 19.55344698719461 24.74281171378894 35.38125722397238 20.322484075044063 16 22.9115161271776 24.818347452502692 30.817986625614346 21.45214979470536 17 22.909930074921142 25.47239575175903 29.494822530665328 22.122851642654496 18 23.48408099175848 23.95375071620172 31.442494701594182 21.119673590445622 19 22.977139039288495 26.65043606524226 28.753739613835926 21.618685281633315 20 23.021945015533397 26.81459247378553 30.50652561375266 19.65693689692841 21 23.00430018418032 27.539814868050367 30.798755742004808 18.65712920576451 22 20.946992151023895 24.025123067742275 31.785676758585 23.24220802264883 23 21.003098749596052 26.08005202251401 31.25335797001172 21.66349125787822 24 21.922017775680665 25.591746184057403 30.099306696907398 22.386929343354538 25 21.536210564297566 27.885772516489986 28.134386207689577 22.443630711522868 26 19.52073465940519 25.965261490452956 30.830080274069832 23.683923576072022 27 22.46048251674772 25.532665737504384 29.819764986706897 22.187086759040994 28 19.514786963443477 26.355430345541308 31.12349994151432 23.00628274950089 29 21.398620531049946 24.930957162711117 30.848716388083197 22.82170591815574 30 23.58479531004348 25.54178553797901 30.07392986080409 20.79948929117342 31 23.03225435520037 26.20971179447935 28.606633267049563 22.151400583270718 32 24.350858549912076 25.597297366954997 27.776533167326527 22.275310915806397 33 24.874652307606905 24.364339994091956 27.055275903702835 23.705731794598304 34 21.760636958586193 24.558234882443788 31.13856743795066 22.542560721019356 35 23.704145742341844 24.02413178508199 28.918292535443314 23.35342993713285 36 23.868896920481287 26.480926730333447 28.16075432645317 21.489422022732093 37 22.24596894906195 26.346310545066682 28.626458920255278 22.781261585616093 38 22.667858849279437 26.852657727940493 26.413916022498153 24.06556740028192 39 22.45830169489509 23.774923324286227 28.772970497445467 24.993804483373218 40 24.32805904872551 22.697597329088 30.26722997955975 22.70711364262674 41 21.3720541557543 23.907160431168307 29.491650426152415 25.229134986924983 42 22.27094927210114 24.383372621169435 29.750375200486918 23.595302906242505 43 21.5707072008755 24.172031157996578 28.785262402433005 25.471999238694913 44 21.74596597521397 24.231706374145762 28.634587438069616 25.38774021257065 45 21.8405343410052 23.051485238809903 28.782090297920092 26.325890122264806 46 24.06556740028192 24.145663039232986 28.221817338326755 23.56695222215834 47 20.900401865990478 24.03900102498627 31.645311133888583 23.415285975134665 48 20.827245205661413 24.738450070083683 29.93475377530001 24.49955094895489 49 22.193629224598876 22.987646635487522 31.165926839374542 23.65279730053906 50 21.14108529590779 22.767780141436212 30.87508450684679 25.216050055809212 51 20.711265134408016 22.709492721011426 29.07967335253778 27.499568792042776 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 168.0 1 450.0 2 732.0 3 3158.0 4 5584.0 5 3647.5 6 1711.0 7 1676.5 8 1642.0 9 1594.0 10 1546.0 11 1536.0 12 1526.0 13 1514.5 14 1503.0 15 1496.0 16 1489.0 17 1457.5 18 1426.0 19 1359.5 20 1293.0 21 1432.0 22 1571.0 23 1787.5 24 2004.0 25 2319.5 26 3115.5 27 3596.0 28 4646.5 29 5697.0 30 6682.0 31 7667.0 32 8770.5 33 9874.0 34 11139.0 35 12404.0 36 13930.0 37 15456.0 38 16847.0 39 18238.0 40 19531.5 41 20825.0 42 23054.0 43 25283.0 44 27626.5 45 29970.0 46 32873.0 47 35776.0 48 45514.0 49 55252.0 50 53219.5 51 51187.0 52 49620.5 53 48054.0 54 41387.5 55 34721.0 56 30931.5 57 27142.0 58 24909.5 59 22677.0 60 19705.5 61 16734.0 62 14545.5 63 12357.0 64 10888.0 65 9419.0 66 7766.5 67 6114.0 68 5126.5 69 4139.0 70 3368.5 71 2598.0 72 2368.0 73 2138.0 74 1631.0 75 855.0 76 586.0 77 440.5 78 295.0 79 222.0 80 149.0 81 92.5 82 36.0 83 37.0 84 38.0 85 24.5 86 11.0 87 9.0 88 7.0 89 4.0 90 1.0 91 1.0 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 504397.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.08926376688696 #Duplication Level Percentage of deduplicated Percentage of total 1 74.1795208317724 28.996228558944363 2 9.550306955681732 7.466289352907568 3 3.573097600669728 4.190092637322297 4 2.0583368264528783 3.218354845212543 5 1.461312050197819 2.856080608795645 6 1.1496014211937622 2.6962243907898644 7 0.9140857444394282 2.5011657138960817 8 0.7812446886356861 2.443062376044784 9 0.7037820747562376 2.4759290839098167 >10 5.55283906020391 36.36907627736303 >50 0.045626178335667705 1.2173847580674027 >100 0.024607377079904885 1.929179105500044 >500 0.0030759221349881106 0.8875386162106258 >1k 0.0025632684458234255 2.7533936750358996 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTC 3515 0.6968717101806712 TruSeq Adapter, Index 22 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3485 0.6909240142189584 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGC 2705 0.5362839192144283 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCG 2343 0.4645150546097617 No Hit GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 1692 0.3354500522405962 TruSeq Adapter, Index 22 (95% over 24bp) GAACTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCT 905 0.1794221615116664 No Hit CGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTG 788 0.15622614726098688 Illumina Single End Adapter 2 (95% over 21bp) CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT 770 0.15265752968395926 Illumina Single End Adapter 2 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 769 0.15245927315190216 TruSeq Adapter, Index 22 (95% over 24bp) GAATGCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTT 636 0.12609115438830923 No Hit GAATGACTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCT 561 0.11122191448402746 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.15860522564567195 0.0 2 0.0 0.0 0.0 0.7848976104140191 0.0 3 0.0 0.0 0.0 1.1427506507770664 0.0 4 0.0 0.0 0.0 1.7307795248583953 0.0 5 0.0 0.0 0.0 3.4962539428267814 0.0 6 0.0 0.0 0.0 4.515490774132281 0.0 7 0.0 0.0 0.0 5.374536327535652 0.0 8 0.0 0.0 0.0 6.569230189711676 0.0 9 0.0 0.0 0.0 7.02740103529561 0.0 10 0.0 0.0 0.0 8.450089909337288 0.0 11 0.0 0.0 0.0 9.797044788133157 0.0 12 0.0 0.0 0.0 11.386665662166905 0.0 13 0.0 0.0 0.0 11.935836255965043 0.0 14 0.0 0.0 0.0 12.193371491107204 0.0 15 0.0 0.0 0.0 12.62418293526726 0.0 16 0.0 0.0 0.0 13.327597111005815 0.0 17 0.0 0.0 0.0 14.122407548022688 0.0 18 0.0 0.0 0.0 14.991564184560971 0.0 19 0.0 0.0 0.0 15.611710616835548 0.0 20 0.0 0.0 0.0 16.153149205883462 0.0 21 0.0 0.0 0.0 16.81334345763357 0.0 22 0.0 0.0 0.0 17.517550659500355 0.0 23 0.0 0.0 0.0 18.18131352882749 0.0 24 0.0 0.0 0.0 18.744758592933742 0.0 25 0.0 0.0 0.0 19.254079623788403 0.0 26 1.9825653205708996E-4 0.0 0.0 19.742583718777073 0.0 27 1.9825653205708996E-4 0.0 0.0 20.248732645118825 0.0 28 1.9825653205708996E-4 0.0 0.0 20.753493775736175 0.0 29 1.9825653205708996E-4 0.0 0.0 21.271538094001354 0.0 30 1.9825653205708996E-4 0.0 0.0 21.923405571405063 0.0 31 1.9825653205708996E-4 0.0 0.0 22.487048892043372 0.0 32 1.9825653205708996E-4 0.0 0.0 23.023729324321913 0.0 33 1.9825653205708996E-4 0.0 0.0 23.564573143773654 0.0 34 1.9825653205708996E-4 0.0 0.0 24.11949317700145 0.0 35 1.9825653205708996E-4 0.0 0.0 24.696221428755525 0.0 36 1.9825653205708996E-4 0.0 0.0 25.197413941795848 0.0 37 1.9825653205708996E-4 0.0 0.0 25.72180246908685 0.0 38 1.9825653205708996E-4 0.0 0.0 26.302099338417953 0.0 39 1.9825653205708996E-4 0.0 0.0 27.063404421517177 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGCGACG 25 3.887681E-5 45.000004 1 CGCTCGA 20 7.029517E-4 45.0 41 GGCGATA 70 0.0 45.0 8 CCGCTCG 30 2.1630694E-6 44.999996 40 CGTTTTT 1650 0.0 42.81818 1 GCTACGA 70 0.0 41.785713 10 CTCACGA 60 3.6379788E-12 41.249996 24 CACGACG 55 6.002665E-11 40.909092 26 CCGATGA 325 0.0 40.846153 18 CGATGAA 335 0.0 39.62686 19 TTCGGGT 35 6.24132E-6 38.571426 4 TCACGAC 65 9.094947E-12 38.076927 25 CGAATAT 65 9.094947E-12 38.076927 14 TAACGGG 95 0.0 37.894737 3 AACGGGA 95 0.0 37.894737 4 TTACGGG 155 0.0 37.741936 3 GCGCGAC 60 1.546141E-10 37.499996 9 TGACCGG 30 1.1390138E-4 37.499996 25 CCCCGAT 30 1.1390138E-4 37.499996 40 CGGTCTA 60 1.546141E-10 37.499996 31 >>END_MODULE