SRR2935462.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935462.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	367811
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4734	1.287074067931628	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTC	2187	0.5945988564779194	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGC	1516	0.41216820595360115	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCG	1461	0.3972148739434111	No Hit
GCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	844	0.22946567666546133	No Hit
CGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTG	844	0.22946567666546133	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTT	559	0.1519802289762949	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	557	0.15143647144865163	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTT	497	0.13512374561935342	No Hit
CGTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTC	494	0.1343081093278885	No Hit
GAACTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCT	477	0.12968617034292068	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	415	0.1128296869859792	No Hit
CGTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCT	400	0.10875150552865466	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCT	378	0.10277017272457865	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCGATA	25	3.8856153E-5	45.000004	9
GACGGGT	35	1.2089185E-7	45.000004	4
GCGTAAG	25	3.8856153E-5	45.000004	1
GATAGGC	25	3.8856153E-5	45.000004	3
TCAGTCG	25	3.8856153E-5	45.000004	15
AACACGT	30	2.1614615E-6	45.000004	41
CGAATAT	45	3.8380676E-10	45.0	14
GTTCACG	20	7.027025E-4	45.0	1
TCGACGG	20	7.027025E-4	45.0	2
CCGATGA	330	0.0	43.636364	18
CGTTTTT	1885	0.0	43.448273	1
CGATGAA	335	0.0	42.985077	19
GCGATGT	60	3.6379788E-12	41.250004	9
CGTTAGG	55	6.002665E-11	40.909092	2
CACAACG	105	0.0	40.714287	12
CTACGAA	50	1.0768417E-9	40.500004	11
TATGCGG	45	1.9221261E-8	40.0	2
AATGGGC	85	0.0	39.705883	4
GCGATTG	40	3.449677E-7	39.375	1
TGTAGCG	40	3.449677E-7	39.375	1