##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935460.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 538999 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.167881573064143 31.0 31.0 33.0 28.0 34.0 2 31.256237952203993 31.0 31.0 34.0 28.0 34.0 3 30.987866396783666 31.0 31.0 34.0 27.0 34.0 4 34.731172042990806 35.0 35.0 37.0 32.0 37.0 5 34.81371579539108 35.0 35.0 37.0 33.0 37.0 6 35.03375330937534 37.0 35.0 37.0 32.0 37.0 7 35.32037350718647 37.0 35.0 37.0 33.0 37.0 8 35.140911207627475 37.0 35.0 37.0 32.0 37.0 9 37.0707997602964 39.0 37.0 39.0 33.0 39.0 10 36.51244436446079 38.0 35.0 39.0 32.0 39.0 11 36.83378447826434 39.0 37.0 39.0 33.0 39.0 12 36.9895250269481 39.0 37.0 39.0 33.0 39.0 13 37.07561424047169 39.0 37.0 39.0 33.0 39.0 14 38.18333800248238 40.0 38.0 41.0 33.0 41.0 15 38.34157948344988 40.0 38.0 41.0 34.0 41.0 16 38.27280941152024 40.0 38.0 41.0 34.0 41.0 17 38.15827858678773 40.0 37.0 41.0 33.0 41.0 18 38.007816341032175 39.0 37.0 41.0 34.0 41.0 19 37.757153538318256 39.0 37.0 41.0 34.0 41.0 20 37.69305508915601 39.0 35.0 41.0 34.0 41.0 21 37.635667227582985 39.0 35.0 41.0 33.0 41.0 22 37.73929821762192 39.0 35.0 41.0 33.0 41.0 23 37.78193280507014 39.0 35.0 41.0 34.0 41.0 24 37.753808448624206 40.0 35.0 41.0 33.0 41.0 25 37.3637260922562 39.0 35.0 41.0 33.0 41.0 26 37.42079484377522 39.0 35.0 41.0 33.0 41.0 27 37.49535342366127 39.0 35.0 41.0 33.0 41.0 28 37.372535013979615 39.0 35.0 41.0 33.0 41.0 29 37.29500240260186 39.0 35.0 41.0 33.0 41.0 30 36.979419256807525 39.0 35.0 41.0 32.0 41.0 31 36.86198675693276 39.0 35.0 41.0 31.0 41.0 32 36.664027205987395 39.0 35.0 41.0 31.0 41.0 33 36.421889465472105 39.0 35.0 41.0 30.0 41.0 34 36.13773865999752 39.0 35.0 41.0 29.0 41.0 35 36.02243603420415 39.0 35.0 41.0 27.0 41.0 36 35.83531323805796 39.0 35.0 41.0 26.0 41.0 37 35.8174542067796 39.0 35.0 41.0 26.0 41.0 38 35.63278967122388 39.0 35.0 41.0 25.0 41.0 39 35.53521249575602 39.0 35.0 41.0 24.0 41.0 40 35.43580043747762 39.0 35.0 41.0 24.0 41.0 41 35.25716745300084 39.0 35.0 41.0 23.0 41.0 42 35.27416006337674 39.0 35.0 41.0 23.0 41.0 43 35.23659413097241 39.0 35.0 41.0 23.0 41.0 44 35.20381299408719 39.0 35.0 41.0 23.0 41.0 45 35.18678142260004 39.0 35.0 41.0 23.0 41.0 46 35.07898530423989 39.0 35.0 40.0 23.0 41.0 47 35.028881315178694 38.0 35.0 40.0 23.0 41.0 48 34.93719468867289 38.0 35.0 40.0 23.0 41.0 49 34.91785513516723 38.0 35.0 40.0 23.0 41.0 50 34.804517262555215 38.0 34.0 40.0 22.0 41.0 51 33.721340855919955 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 3.0 8 16.0 9 33.0 10 28.0 11 22.0 12 17.0 13 17.0 14 21.0 15 44.0 16 69.0 17 120.0 18 243.0 19 415.0 20 778.0 21 1298.0 22 2022.0 23 3059.0 24 4762.0 25 7117.0 26 9912.0 27 10384.0 28 9910.0 29 9411.0 30 9771.0 31 11385.0 32 13995.0 33 19215.0 34 31524.0 35 39277.0 36 42263.0 37 63625.0 38 113644.0 39 134581.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.201185902014664 18.82007202239707 21.401709465138154 20.577032610450114 2 41.16705225798192 21.97054168931668 21.128054040916588 15.734352011784807 3 29.533449969294935 21.723416926562017 33.115831383731695 15.627301720411355 4 25.661272098835063 23.08037677249865 33.48930146438119 17.76904966428509 5 23.393549895268823 27.225096892573085 31.19170907552704 18.18964413663105 6 22.216924335666672 31.999873840211208 31.754789897569385 14.028411926552739 7 70.95634685778637 5.399082373065627 18.815248265766726 4.829322503381268 8 71.42109725621012 5.741569093820211 17.763483791250074 5.07384985871959 9 65.03852511785736 6.9005693888114825 20.140482635403774 7.92042285792738 10 33.20043265386392 24.438635322143455 27.2555236651645 15.105408358828123 11 25.3147037378548 23.993179950241096 32.634383366202904 18.0577329457012 12 22.696888120386124 20.667941870022023 36.4538709719313 20.18129903766055 13 21.96720216549567 21.12972380282709 38.04478301443973 18.85829101723751 14 18.56329974638172 25.06145651476162 36.41453880248386 19.960704936372796 15 18.217659030907292 24.50041651283212 38.74125926022126 18.540665196039324 16 20.76219065341494 24.596891645439044 35.60674509600204 19.03417260514398 17 20.227124725648842 24.749211037497286 34.6989512039911 20.32471303286277 18 21.35477060254286 24.22750320501522 34.77817213018948 19.639554062252433 19 20.392431154788785 26.568509403542496 33.22640672802733 19.8126527136414 20 21.871283620192244 25.25793183289765 33.872419058291385 18.998365488618717 21 20.812283510730076 26.63010506512999 34.521585383275294 18.036026040864638 22 20.34029747736081 23.606908361611058 34.54199358440368 21.510800576624447 23 19.406529511186477 25.481679928905248 34.73846890253971 20.373321657368567 24 19.834545147579124 24.008207807435635 34.76685485501829 21.39039218996696 25 20.155139434395984 26.21656069862838 32.83067315523777 20.79762671173787 26 19.43101935254054 25.302644346278935 33.84922792064549 21.41710838053503 27 20.55365594370305 24.84457299549721 32.954606594817434 21.64716446598231 28 18.81116662554105 25.98446379306826 34.02974773608115 21.174621845309545 29 19.717105226540312 25.61748723095961 33.312863289171226 21.352544253328855 30 19.62879337438474 24.738264820528425 33.922326386505354 21.71061541858148 31 20.141595810010777 24.888357863372658 33.10043246833482 21.869613858281742 32 20.62879522967575 25.316744557967642 33.78855990456383 20.265900307792776 33 20.055510307069216 24.313032120653286 33.91731710077384 21.714140471503658 34 20.40764454108449 24.794294609080907 34.05219675732237 20.74586409251223 35 20.6720235102477 24.635110640279482 32.46722164605129 22.225644203421528 36 21.07425060157811 26.333629561464868 31.257571906441385 21.33454793051564 37 21.926756821441227 24.885203868652816 32.02825979268978 21.159779517216172 38 20.1866793815944 25.315074796057136 32.6445874667671 21.853658355581366 39 22.81562674513311 23.91841172247073 31.677424262382676 21.58853727001349 40 22.683158966899754 23.54438505451773 32.72455050937015 21.047905469212374 41 21.019148458531465 25.34141992842287 31.434752198056024 22.204679414989638 42 21.379445972998095 25.461642785979194 31.19263672103288 21.966274519989835 43 21.656255391939503 24.44735518989831 31.92269373412567 21.97369568403652 44 21.78315729713784 24.317113760878964 31.37686711849187 22.522861823491326 45 20.899482188278643 23.643828652743327 31.604325796522815 23.85236336245522 46 21.606348063725537 24.507095560474138 30.504509284803866 23.38204709099646 47 20.610984435963704 24.356260401225235 32.92455088042835 22.10820428238271 48 20.20040853508077 23.836778917957176 32.67853929228069 23.284273254681363 49 20.948832929189106 23.050135529008404 33.03865127764615 22.962380264156334 50 19.494470305139714 23.02601674585667 34.4481158592131 23.03139708979052 51 19.670166363945015 22.45774110898165 32.50339982077889 25.368692706294443 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 245.0 1 460.5 2 676.0 3 9417.0 4 18158.0 5 11758.5 6 5359.0 7 5008.0 8 4657.0 9 4714.0 10 4771.0 11 4603.5 12 4436.0 13 4256.5 14 4077.0 15 3895.5 16 3714.0 17 3508.5 18 3303.0 19 3209.0 20 3115.0 21 3174.0 22 3233.0 23 3283.0 24 3333.0 25 3583.0 26 4489.5 27 5146.0 28 5794.5 29 6443.0 30 7509.5 31 8576.0 32 9737.0 33 10898.0 34 12151.5 35 13405.0 36 14754.5 37 16104.0 38 17193.0 39 18282.0 40 20137.5 41 21993.0 42 24050.0 43 26107.0 44 29228.0 45 32349.0 46 42084.5 47 51820.0 48 51756.5 49 51693.0 50 50419.5 51 49146.0 52 42897.0 53 36648.0 54 32538.5 55 28429.0 56 25566.0 57 22703.0 58 21126.0 59 19549.0 60 18290.5 61 17032.0 62 15182.5 63 13333.0 64 10977.0 65 8621.0 66 7479.5 67 6338.0 68 5420.5 69 4503.0 70 3735.5 71 2968.0 72 2376.5 73 1785.0 74 1407.0 75 840.0 76 651.0 77 470.5 78 290.0 79 209.5 80 129.0 81 101.5 82 74.0 83 48.5 84 23.0 85 15.0 86 7.0 87 4.5 88 2.0 89 4.0 90 6.0 91 4.5 92 3.0 93 3.0 94 3.0 95 1.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 538999.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 41.57665605739498 #Duplication Level Percentage of deduplicated Percentage of total 1 74.60727589727895 31.019210493603417 2 8.880392287744506 7.384340316045926 3 3.7577298903941423 4.687015296285294 4 2.27785718741911 3.788227393167578 5 1.6559781802310978 3.442501761900959 6 1.2676247115981973 3.162215798638366 7 1.0874055584389055 3.164748082867973 8 0.9154220616053597 3.044815056217398 9 0.8358207569606322 3.1275568924005355 >10 4.646557332356825 28.657062069058192 >50 0.03959192030267 1.1326287953690322 >100 0.021595592891155185 1.5417219704421892 >500 0.0022495409261619986 0.6726561763783198 >1k 0.004049173667091598 2.92313628149722 >5k 0.0 0.0 >10k+ 4.4990818523239973E-4 2.2521636161276337 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 12040 2.2337703780526494 No Hit GAATCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 2705 0.5018562186571774 No Hit CGTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTT 2523 0.46808992224475365 No Hit CGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTG 1947 0.36122515997246746 No Hit CGTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTC 1886 0.3499078848012705 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCT 1553 0.28812669411260505 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGC 1421 0.26363685275853943 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCG 1295 0.24026018601147683 No Hit GCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 1153 0.21391505364573962 No Hit CGTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT 1144 0.21224529173523513 No Hit CCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGC 799 0.14823775183256369 No Hit GAACTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCT 772 0.14322846610105028 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTC 713 0.13228224913218764 No Hit CTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCCGTCTTCTGCT 710 0.13172566182868614 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACTTTGCGTCGTATGCC 602 0.11168851890263247 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.421164046686543E-4 0.0 0.0 0.13469412744736076 0.0 2 7.421164046686543E-4 0.0 0.0 0.5788507956415504 0.0 3 7.421164046686543E-4 0.0 0.0 1.1248629403765127 0.0 4 7.421164046686543E-4 0.0 0.0 1.7827491331152747 0.0 5 7.421164046686543E-4 0.0 0.0 3.4862773400321707 0.0 6 7.421164046686543E-4 0.0 0.0 5.191475308859571 0.0 7 7.421164046686543E-4 0.0 0.0 6.366245577450051 0.0 8 7.421164046686543E-4 0.0 0.0 7.859198254542216 0.0 9 7.421164046686543E-4 0.0 0.0 8.652335162031841 0.0 10 7.421164046686543E-4 0.0 0.0 10.017643817520998 0.0 11 7.421164046686543E-4 0.0 0.0 11.140651466885839 0.0 12 7.421164046686543E-4 0.0 0.0 12.30150705288878 0.0 13 7.421164046686543E-4 0.0 0.0 12.879615732125663 0.0 14 7.421164046686543E-4 0.0 0.0 13.184996632646813 0.0 15 7.421164046686543E-4 0.0 0.0 13.51486737452203 0.0 16 7.421164046686543E-4 0.0 0.0 14.012456423852363 0.0 17 7.421164046686543E-4 0.0 0.0 14.57590830409704 0.0 18 7.421164046686543E-4 0.0 0.0 15.211345475594575 0.0 19 7.421164046686543E-4 0.0 0.0 15.628971482321859 0.0 20 7.421164046686543E-4 0.0 0.0 16.061625346243684 0.0 21 7.421164046686543E-4 0.0 0.0 16.510234712865888 0.0 22 7.421164046686543E-4 0.0 0.0 17.006710587589215 0.0 23 7.421164046686543E-4 0.0 0.0 17.517657732203585 0.0 24 9.276455058358178E-4 0.0 0.0 17.94177725747172 0.0 25 9.276455058358178E-4 0.0 0.0 18.326379084191252 0.0 26 9.276455058358178E-4 0.0 0.0 18.683151545735708 0.0 27 9.276455058358178E-4 0.0 0.0 19.067011256050566 0.0 28 9.276455058358178E-4 0.0 0.0 19.449201204454926 0.0 29 9.276455058358178E-4 0.0 0.0 19.868868031295047 0.0 30 9.276455058358178E-4 0.0 0.0 20.393544329395787 0.0 31 9.276455058358178E-4 0.0 0.0 20.813582214438245 0.0 32 9.276455058358178E-4 0.0 0.0 21.25272959690092 0.0 33 9.276455058358178E-4 0.0 0.0 21.672953011044548 0.0 34 9.276455058358178E-4 0.0 0.0 22.09150666327767 0.0 35 9.276455058358178E-4 0.0 0.0 22.510987961016625 0.0 36 9.276455058358178E-4 0.0 0.0 22.931025846059082 0.0 37 9.276455058358178E-4 0.0 0.0 23.33232529188366 0.0 38 9.276455058358178E-4 0.0 0.0 23.769431854233495 0.0 39 0.0011131746070029815 0.0 0.0 24.22230839018254 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 25 3.888039E-5 45.0 28 TAGCGCC 20 7.029949E-4 45.0 20 TCGTCCC 25 3.888039E-5 45.0 38 AATCGCG 20 7.029949E-4 45.0 1 TGCGTAG 20 7.029949E-4 45.0 1 CGTTTTT 5445 0.0 43.512394 1 TACGGGT 60 3.6379788E-12 41.250004 4 GCTAGCG 50 1.0786607E-9 40.5 1 CGTTTCT 300 0.0 39.75 1 ACACGAC 80 0.0 39.375 26 GCTACGA 40 3.4536606E-7 39.375 10 ACGGGTG 70 0.0 38.571426 5 TACGCGG 35 6.242117E-6 38.571426 2 GTTTTTT 6345 0.0 38.014183 2 CGTTCTG 250 0.0 37.8 1 CTCGTCC 30 1.1391174E-4 37.500004 37 ACCATAG 30 1.1391174E-4 37.500004 21 CCCGTCG 30 1.1391174E-4 37.500004 40 GGACGCA 30 1.1391174E-4 37.500004 8 CGGTCTA 30 1.1391174E-4 37.500004 31 >>END_MODULE