##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935459.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 673573 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.0452957585889 31.0 30.0 33.0 28.0 34.0 2 31.12307945835121 31.0 31.0 34.0 28.0 34.0 3 30.86772183564365 31.0 30.0 34.0 27.0 34.0 4 34.62698029760694 35.0 35.0 37.0 32.0 37.0 5 34.687376127012215 35.0 35.0 37.0 32.0 37.0 6 34.863364475713844 35.0 35.0 37.0 32.0 37.0 7 35.12046504239333 36.0 35.0 37.0 32.0 37.0 8 34.94404912310915 37.0 35.0 37.0 32.0 37.0 9 36.85480118710221 39.0 37.0 39.0 32.0 39.0 10 36.36319597133495 38.0 35.0 39.0 32.0 39.0 11 36.651712583491324 39.0 35.0 39.0 32.0 39.0 12 36.74551681851856 39.0 35.0 39.0 33.0 39.0 13 36.73653041318462 39.0 35.0 39.0 33.0 39.0 14 37.72247106104312 40.0 37.0 41.0 33.0 41.0 15 37.87971162739599 40.0 37.0 41.0 33.0 41.0 16 37.93573079681044 40.0 37.0 41.0 33.0 41.0 17 37.763225366812506 40.0 36.0 41.0 33.0 41.0 18 37.60905351016148 39.0 36.0 40.0 33.0 41.0 19 37.3485873097645 39.0 36.0 40.0 33.0 41.0 20 37.114041091314526 39.0 35.0 40.0 32.0 41.0 21 37.130042326518435 39.0 35.0 40.0 32.0 41.0 22 37.23077379883101 39.0 35.0 40.0 33.0 41.0 23 37.28276222473288 39.0 35.0 41.0 33.0 41.0 24 37.23556466782368 39.0 35.0 41.0 33.0 41.0 25 36.88748806736612 39.0 35.0 40.0 32.0 41.0 26 36.867255664939066 39.0 35.0 40.0 32.0 41.0 27 36.90491156860504 39.0 35.0 40.0 32.0 41.0 28 36.738066994965656 39.0 35.0 40.0 32.0 41.0 29 36.65907184521945 39.0 35.0 40.0 31.0 41.0 30 36.31537784323303 38.0 35.0 40.0 31.0 41.0 31 36.15951797355298 38.0 35.0 40.0 30.0 41.0 32 35.87481386575768 38.0 35.0 40.0 29.0 41.0 33 35.541755682012194 38.0 35.0 40.0 26.0 41.0 34 35.26880679599687 38.0 35.0 40.0 24.0 41.0 35 35.12355156753611 38.0 35.0 40.0 23.0 41.0 36 34.92024769401387 38.0 35.0 40.0 22.0 41.0 37 34.92885255198768 38.0 35.0 40.0 22.0 41.0 38 34.753924222021965 38.0 34.0 40.0 21.0 41.0 39 34.60631290149694 38.0 34.0 40.0 20.0 41.0 40 34.46584854202885 38.0 34.0 40.0 20.0 41.0 41 34.34954340509492 38.0 34.0 40.0 19.0 41.0 42 34.375233270929805 38.0 34.0 40.0 18.0 41.0 43 34.375988942549654 38.0 34.0 40.0 18.0 41.0 44 34.348002369453646 38.0 34.0 40.0 18.0 41.0 45 34.338478531651354 38.0 34.0 40.0 20.0 41.0 46 34.20476473967929 38.0 34.0 40.0 20.0 41.0 47 34.11698212368964 37.0 34.0 40.0 20.0 41.0 48 34.06318691515248 37.0 34.0 40.0 20.0 41.0 49 34.051170400238725 37.0 34.0 40.0 19.0 41.0 50 33.94668729298829 37.0 34.0 40.0 18.0 41.0 51 32.8630660670781 36.0 32.0 40.0 17.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 3.0 8 15.0 9 28.0 10 29.0 11 20.0 12 15.0 13 27.0 14 34.0 15 58.0 16 120.0 17 214.0 18 363.0 19 715.0 20 1425.0 21 2474.0 22 3639.0 23 5536.0 24 7805.0 25 11320.0 26 14527.0 27 15227.0 28 14421.0 29 13580.0 30 14369.0 31 17204.0 32 21526.0 33 29806.0 34 47218.0 35 52957.0 36 54061.0 37 78741.0 38 131200.0 39 134889.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.867325442082745 17.218475206102383 19.108990413808154 21.80520893800672 2 41.100964557664874 24.397652518732194 19.746931661453175 14.75445126214976 3 28.37034738625212 24.227960443782635 33.21377192969433 14.187920240270913 4 24.252011289051076 20.926462313661624 37.530156345340444 17.291370051946856 5 24.853430882769945 24.97561511521394 32.628386232821086 17.542567769195024 6 21.8835968781409 31.53644816523228 33.18645492025363 13.393500036373194 7 66.88064990728547 5.048895962278773 23.26726279111544 4.803191339320311 8 66.45025854658664 7.399049546225873 20.504978673432575 5.6457132337549165 9 60.72541506265839 5.928830282686509 22.394751571099196 10.951003083555904 10 36.00708460701364 19.028524005564357 29.66404532248175 15.300346064940252 11 28.422457551000413 21.457807839684786 32.614133880069424 17.505600729245383 12 24.017441316679854 18.653954359809553 37.077050297443634 20.25155402606696 13 23.770994383682247 18.93350832055323 39.81246279170929 17.48303450405524 14 18.597538796834197 24.06331607709929 38.49055707399198 18.848588052074533 15 17.801040124826855 22.010977280858942 41.69332796890612 18.494654625408085 16 21.448603195199333 23.074410642944418 35.86040414327771 19.616582018578534 17 21.130152188404228 24.054408356629498 35.37211259952522 19.44332685544106 18 21.288264226743056 22.581516776949194 35.99639534244989 20.13382365385786 19 20.466230089388976 24.6674079869591 33.59784314395024 21.26851877970168 20 21.5949867349196 25.79809463859151 34.94780818114741 17.659110445341486 21 20.390662927403564 26.747509178663638 36.04924781723733 16.812580076695475 22 19.1559044082824 21.90675695136236 37.778681746447674 21.158656893907565 23 19.982540867879205 24.261809781567848 36.893105869742406 18.862543480810544 24 21.041223445714124 23.472882671959834 34.78969614280857 20.69619773951747 25 20.717576268644972 26.45236670709782 32.866816217395886 19.96324080686132 26 19.40056979718605 22.810148269007218 34.93756430260714 22.851717631199588 27 21.780861168722616 22.61670227280488 34.034024522954454 21.56841203551805 28 19.320103388942254 24.234492772127147 33.71438582009671 22.73101801883389 29 21.381349905652396 23.58096301365999 32.47398574467801 22.563701336009608 30 21.80342739391276 25.37141482808842 32.62319006254704 20.201967715451776 31 23.965182689923736 22.94094329790535 30.964720973079384 22.12915303909153 32 26.526003862981444 23.79370907088022 30.11922983848818 19.56105722765016 33 23.901344026556885 25.101510897853686 29.183919189159894 21.81322588642953 34 21.836831345674483 24.07207533556125 30.860946029606296 23.23014728915797 35 21.150491483476923 25.885093375179824 31.14079691436563 21.823618226977626 36 21.718952511457555 26.893744256376074 28.563644920446635 22.82365831171974 37 21.538422709936413 25.937500463943774 30.35706597503166 22.167010851088154 38 22.244804943191014 25.5029521670257 29.461543143801784 22.790699745981506 39 22.511442709253487 23.46545957156834 29.53443798964626 24.488659729531914 40 22.01142266688243 23.48743194872716 32.89710246699318 21.604042917397223 41 19.327526489333746 24.586496192691808 30.550511971234002 25.535465346740445 42 20.673928438342987 23.877441643296272 33.442997269783675 22.005632648577066 43 21.981433341300793 23.38009391706615 30.778846539276365 23.859626202356683 44 22.24643802527714 23.099055336244177 30.77335344498666 23.88115319349202 45 21.132082194506015 22.14830463810159 30.599949819841356 26.119663347551047 46 22.94213099396799 23.67018868036575 30.011446420803683 23.376233904862577 47 19.699720742963272 24.058119906825244 33.694046525024014 22.54811282518747 48 20.254671728231386 24.10547928732298 31.682831704952548 23.957017279493094 49 20.859357486122516 22.12974688712285 34.26191370497333 22.748981921781304 50 19.758511698063906 22.987263444348276 33.46155502076241 23.792669836825407 51 19.356773504876234 22.14533539794499 31.922300923582153 26.575590173596623 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 279.0 1 561.0 2 843.0 3 14410.0 4 27977.0 5 17636.0 6 7295.0 7 7008.0 8 6721.0 9 6659.5 10 6598.0 11 6377.0 12 6156.0 13 5966.0 14 5776.0 15 5477.5 16 5179.0 17 4878.5 18 4578.0 19 4241.5 20 3905.0 21 3827.0 22 3749.0 23 3687.0 24 3625.0 25 3755.0 26 4541.5 27 5198.0 28 6005.5 29 6813.0 30 7683.5 31 8554.0 32 9754.5 33 10955.0 34 12491.0 35 14027.0 36 15142.0 37 16257.0 38 17270.5 39 18284.0 40 20193.5 41 22103.0 42 23710.5 43 25318.0 44 27538.0 45 29758.0 46 33159.0 47 36560.0 48 57267.5 49 77975.0 50 69727.5 51 61480.0 52 61147.5 53 60815.0 54 53767.0 55 46719.0 56 41198.0 57 35677.0 58 32939.5 59 30202.0 60 26500.5 61 22799.0 62 20543.5 63 18288.0 64 15754.0 65 13220.0 66 11230.0 67 9240.0 68 7569.0 69 5898.0 70 5118.0 71 4338.0 72 3542.5 73 2747.0 74 2263.0 75 1354.5 76 930.0 77 739.0 78 548.0 79 412.5 80 277.0 81 218.5 82 160.0 83 95.0 84 30.0 85 29.5 86 29.0 87 20.0 88 11.0 89 9.5 90 8.0 91 8.0 92 8.0 93 4.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 673573.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.66609690580468 #Duplication Level Percentage of deduplicated Percentage of total 1 73.27860074646705 29.799546790776 2 9.273716696117155 7.5425172368255815 3 4.064548386717974 4.958679557178156 4 2.547510890581229 4.14389298979876 5 1.917014776883575 3.8978754343303494 6 1.5018889183418715 3.664557617702683 7 1.2713792504234773 3.6191422261225306 8 1.0726797815414637 3.4897359956050042 9 0.8862703096138285 3.243703886594411 >10 4.117323418898558 23.608842407964513 >50 0.039888861995705786 1.0584361141657168 >100 0.02031377130370483 1.316924573709467 >500 0.0036934129643099427 0.9807843825641859 >1k 0.004432095557171931 4.165104397073114 >5k 0.0 0.0 >10k+ 7.386825928619885E-4 4.510256389589577 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 19160 2.8445320700206214 No Hit GAATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 10869 1.613633563103034 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGC 4457 0.6616951688978032 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCG 4199 0.6233919708776925 No Hit GAACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT 3696 0.5487155809392598 TruSeq Adapter, Index 8 (95% over 21bp) CGTTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTT 2799 0.4155451599158517 No Hit GCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 2594 0.38511044831072505 TruSeq Adapter, Index 13 (95% over 23bp) CGTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTC 1970 0.292470155424876 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCT 1715 0.254612343428255 No Hit CGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTG 1690 0.25090079323250786 TruSeq Adapter, Index 8 (95% over 22bp) GAATGCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTT 1365 0.2026506406877948 No Hit CGTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCT 1197 0.1777090233723739 TruSeq Adapter, Index 8 (95% over 21bp) GAATGACTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCT 1045 0.15514279818223117 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTC 1004 0.14905585586120584 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTC 788 0.1169880621699504 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCC 721 0.10704110764534801 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCAGGACTCT 705 0.10466571552006983 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 700 0.10392340548092041 No Hit CCTGTCTCTTATACACATCTGACGCCAGGACTCTCGTATGCCGTCTTCTGC 685 0.1016964753634721 TruSeq Adapter, Index 13 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.09397645095631803 0.0 2 0.0 0.0 0.0 0.6386835576841708 0.0 3 0.0 0.0 0.0 1.0831788091268504 0.0 4 0.0 0.0 0.0 2.083961203908114 0.0 5 0.0 0.0 0.0 4.749002706462402 0.0 6 0.0 0.0 0.0 6.452307322294688 0.0 7 0.0 0.0 0.0 7.760851459307306 0.0 8 0.0 0.0 0.0 9.376118104496468 0.0 9 0.0 0.0 0.0 10.36888355085492 0.0 10 0.0 0.0 0.0 12.243364861715063 0.0 11 1.484620078298863E-4 0.0 0.0 13.336193701350856 0.0 12 1.484620078298863E-4 0.0 0.0 14.859710825701148 0.0 13 1.484620078298863E-4 0.0 0.0 15.430101859783573 0.0 14 1.484620078298863E-4 0.0 0.0 15.827386192736348 0.0 15 1.484620078298863E-4 0.0 0.0 16.20551892667907 0.0 16 1.484620078298863E-4 0.0 0.0 16.59285630510724 0.0 17 1.484620078298863E-4 0.0 0.0 16.976779057355326 0.0 18 1.484620078298863E-4 0.0 0.0 17.41444505643783 0.0 19 1.484620078298863E-4 0.0 0.0 17.831474836431983 0.0 20 2.969240156597726E-4 0.0 0.0 18.152598159368026 0.0 21 2.969240156597726E-4 0.0 0.0 18.484113822852162 0.0 22 2.969240156597726E-4 0.0 0.0 18.877538143601363 0.0 23 4.453860234896589E-4 0.0 0.0 19.225830013970274 0.0 24 4.453860234896589E-4 0.0 0.0 19.53210713612333 0.0 25 4.453860234896589E-4 0.0 0.0 19.81715419115671 0.0 26 4.453860234896589E-4 0.0 0.0 20.098638158002178 0.0 27 5.938480313195452E-4 0.0 0.0 20.439803851995254 0.0 28 5.938480313195452E-4 0.0 0.0 20.74697174619529 0.0 29 5.938480313195452E-4 0.0 0.0 21.081456649836024 0.0 30 5.938480313195452E-4 0.0 0.0 21.5820705402384 0.0 31 5.938480313195452E-4 0.0 0.0 21.939863979108427 0.0 32 5.938480313195452E-4 0.0 0.0 22.36312916343143 0.0 33 5.938480313195452E-4 0.0 0.0 22.73339341095917 0.0 34 5.938480313195452E-4 0.0 0.0 23.09578917207192 0.0 35 5.938480313195452E-4 0.0 0.0 23.480305772351326 0.0 36 5.938480313195452E-4 0.0 0.0 23.836317667127393 0.0 37 8.907720469793177E-4 0.0 0.0 24.228702753821782 0.0 38 8.907720469793177E-4 0.0 0.0 24.701999634783462 0.0 39 8.907720469793177E-4 0.0 0.0 25.380619472573873 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACGGGT 50 2.1827873E-11 45.0 4 TTACGAG 20 7.031205E-4 45.0 1 TCGACAG 20 7.031205E-4 45.0 1 CGTCATA 25 3.88908E-5 45.0 38 TGCGTTG 25 3.88908E-5 45.0 1 ATCGACG 20 7.031205E-4 45.0 1 CTACGAA 30 2.164159E-6 44.999996 11 CGTTTTT 7905 0.0 44.28843 1 CCGATGA 710 0.0 40.880283 18 ACGGGCG 45 1.9263098E-8 40.0 5 CGATGAA 720 0.0 40.0 19 TAGTGCG 45 1.9263098E-8 40.0 1 TAGCCGT 40 3.4553705E-7 39.375 44 CGGCGAA 120 0.0 39.374996 31 GTTTTTT 9090 0.0 39.034653 2 TCACGAC 35 6.244438E-6 38.571426 25 CACGACG 35 6.244438E-6 38.571426 26 GGTTACG 35 6.244438E-6 38.571426 1 CACGCCG 170 0.0 38.38235 26 TAGTAGG 135 0.0 38.333332 2 >>END_MODULE