SRR2935458.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935458.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	480055
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC	3580	0.7457478830550667	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGC	2993	0.6234702273697805	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2811	0.5855579048234056	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCG	2684	0.5591026028267595	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	2067	0.4305756632052577	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGC	1274	0.2653862578246242	Illumina Single End Adapter 1 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTG	911	0.18976992219641498	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCTGCT	906	0.18872837487371238	Illumina Single End Adapter 1 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTCT	823	0.1714386893168491	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCT	651	0.13560946141587943	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTGAGAT	606	0.12623553551155597	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTC	496	0.10332149441209862	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTTC	484	0.10082178083761234	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGTGTGAGATCGTATGCCGTCTT	482	0.10040516190853131	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGATC	20	7.029178E-4	45.0	39
ATGTGCG	25	3.8874008E-5	45.0	1
GCTTGCG	20	7.029178E-4	45.0	1
CGCTAGA	25	3.8874008E-5	45.0	24
GTACTAG	40	6.8012014E-9	45.0	1
TTGCGAG	20	7.029178E-4	45.0	1
GCGATTA	20	7.029178E-4	45.0	9
TCGTAAG	20	7.029178E-4	45.0	1
CGGTCTA	20	7.029178E-4	45.0	31
GCTACGA	20	7.029178E-4	45.0	10
CGATCGT	20	7.029178E-4	45.0	41
CGATCGA	45	3.8380676E-10	45.0	41
GCGTAAG	40	6.8012014E-9	45.0	1
TAGTACG	20	7.029178E-4	45.0	1
CCGATCG	65	0.0	44.999996	40
CGTTTTT	1190	0.0	42.163864	1
CGGCGAA	65	0.0	41.53846	31
CTTGCGG	60	3.6379788E-12	41.250004	2
TCGAATG	55	6.002665E-11	40.909092	44
TTACACG	105	0.0	40.714287	34