SRR2935456.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935456.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	476997
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13397	2.808613052073703	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTC	2829	0.5930854911037177	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTT	2594	0.5438189338717014	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTC	1802	0.37778015375358753	No Hit
CGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTG	1716	0.35975069025591355	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCT	1522	0.3190795749239513	No Hit
CGTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCT	1217	0.2551378729845261	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	1109	0.23249622115023785	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCG	1079	0.2262068734184911	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGC	1009	0.21153172871108206	No Hit
GAACTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCT	892	0.18700327255726976	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	854	0.17903676543039054	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCC	680	0.14255854858625946	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTC	605	0.1268351792568926	No Hit
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	597	0.12515801986176012	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGT	524	0.1098539403811764	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCG	483	0.10125849848112252	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCTACGA	45	3.8380676E-10	45.000004	10
TCACCGG	20	7.029133E-4	45.0	2
TCGATGG	25	3.8873615E-5	45.0	2
CGGTCTA	35	1.2099372E-7	45.0	31
TTGCACG	20	7.029133E-4	45.0	1
TGATGCG	20	7.029133E-4	45.0	1
CGTTTTT	5660	0.0	44.20495	1
GCGATAT	45	1.9243089E-8	40.000004	9
CGACGGT	40	3.452551E-7	39.375	28
ATGCGAG	40	3.452551E-7	39.375	1
CGTAAGG	75	0.0	39.0	2
GTTTTTT	6445	0.0	38.995342	2
ACCGGGC	35	6.240607E-6	38.571426	4
AGGGCGC	135	0.0	38.333332	6
CGTGCGG	65	9.094947E-12	38.07692	2
CGTTCTG	245	0.0	37.65306	1
CGTTTCT	270	0.0	37.5	1
ATGGGCG	120	0.0	37.499996	5
ATAGCGG	60	1.546141E-10	37.499996	2
AACGGGC	60	1.546141E-10	37.499996	4