SRR2935451.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935451.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	395955
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTC	10092	2.548774481948706	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGC	8574	2.165397583058681	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCG	7556	1.908297660087636	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	2830	0.7147276837014307	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2603	0.6573979366342135	No Hit
GAACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCT	1993	0.503340026013057	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCT	1600	0.40408632294073826	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCTTGAAGGT	1594	0.40257099922971046	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTC	1433	0.36190981298379865	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTA	1373	0.346756575873521	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTT	711	0.17956585975679054	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	594	0.15001704739174906	No Hit
CTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGCT	590	0.1490068315843972	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTGC	506	0.12779229963000846	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCTTGAAGGTCGTATGCCGTCTTCTG	476	0.12021568107486963	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	30	2.1618835E-6	45.000004	4
CGTAAGC	75	0.0	45.000004	43
CGTCGAA	30	2.1618835E-6	45.000004	42
ATGGGTT	25	3.886158E-5	45.0	5
TCGTTTA	35	1.2092278E-7	45.0	38
AGTTTCG	20	7.0276787E-4	45.0	1
CTATCGG	20	7.0276787E-4	45.0	2
CGCATCG	35	1.2092278E-7	45.0	21
CCGTCGA	20	7.0276787E-4	45.0	41
TATTGCG	25	3.886158E-5	45.0	1
GCGATCG	20	7.0276787E-4	45.0	33
CATCGTT	35	1.2092278E-7	45.0	36
CTCGACG	25	3.886158E-5	45.0	36
CCGCGTA	20	7.0276787E-4	45.0	40
AACTCGC	35	1.2092278E-7	45.0	40
CGGTCGA	160	0.0	45.0	41
GTAAGCG	25	3.886158E-5	45.0	1
GCTCGAC	20	7.0276787E-4	45.0	35
ACCCCTA	25	3.886158E-5	45.0	31
TATCGGG	20	7.0276787E-4	45.0	3