SRR2935450.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935450.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	397735
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3827	0.9621984487158536	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	3300	0.8296981658642061	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGC	2347	0.5900913925100884	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCG	2295	0.5770173608055614	No Hit
GCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	1632	0.4103234565728437	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTG	1103	0.27732032634794523	No Hit
CCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGC	950	0.23885250229424113	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT	938	0.23583541805473493	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTC	900	0.2262813179629653	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	810	0.20365318616666875	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTT	645	0.16216827787345844	No Hit
CTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCTGCT	631	0.15864834626070123	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCT	547	0.1375287565841578	No Hit
CGTCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCTTCT	539	0.13551736709115364	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTATTCAT	520	0.13074031704526884	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTCT	516	0.12973462229876676	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTATTCATCGTATGCCGTC	462	0.11615774322098886	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAA	25	3.8861897E-5	45.0	31
GCACGTG	35	1.209246E-7	45.0	12
CTAACGG	40	6.7957444E-9	45.0	2
GCGATAC	20	7.0277177E-4	45.0	9
TACTCAC	25	3.8861897E-5	45.0	30
CCAGTAT	20	7.0277177E-4	45.0	11
ATGTTAG	25	3.8861897E-5	45.0	1
GGCCTAT	40	6.7957444E-9	45.0	8
CGGAGAT	20	7.0277177E-4	45.0	22
GCATCCG	20	7.0277177E-4	45.0	9
ATCGAAT	25	3.8861897E-5	45.0	43
TACCGGA	20	7.0277177E-4	45.0	19
CGTTTTT	1960	0.0	43.27806	1
TAGGGTA	105	0.0	40.714287	5
CGTTTCT	100	0.0	40.5	1
ATGGGCG	90	0.0	40.0	5
CGTTCTG	90	0.0	40.0	1
GTAGGGT	125	0.0	39.600002	4
TTTAGCG	40	3.450623E-7	39.375	1
CGTGGCA	40	3.450623E-7	39.375	15