SRR2935449.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935449.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	299972
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTC	2133	0.7110663661941782	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGC	1886	0.6287253476991186	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCG	1695	0.5650527382555705	No Hit
GCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	1385	0.46170975957756055	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	935	0.31169575827077195	No Hit
CCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	644	0.21468670409238197	No Hit
CTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGCT	616	0.2053524995666262	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCT	413	0.13767951675489715	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATTAGACGT	396	0.132012321149974	No Hit
TCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCTGC	368	0.12267811662421826	No Hit
GAACTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTCTTCT	366	0.12201138772952143	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATTAGACGTCGTA	332	0.11067699651967518	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATTAGACGTCGTATGCCGTC	319	0.10634325870414571	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGCGAT	20	7.024941E-4	45.000004	31
GCGACAG	30	2.160119E-6	45.000004	1
CGCATGG	25	3.88389E-5	45.000004	2
GGCCGTT	20	7.024941E-4	45.000004	13
CGTCTGG	35	1.2079181E-7	45.000004	2
AGGCGAC	25	3.88389E-5	45.000004	9
TAGCACG	25	3.88389E-5	45.000004	1
GCTAGCG	35	1.2079181E-7	45.000004	1
TTACGAG	40	6.7866495E-9	45.000004	1
GGTCTCG	20	7.024941E-4	45.000004	8
CTGGGCG	20	7.024941E-4	45.000004	5
CTAGGCG	20	7.024941E-4	45.000004	1
CCGTTGG	30	2.160119E-6	45.000004	2
TAGTACG	20	7.024941E-4	45.000004	1
ACGGTTA	30	2.160119E-6	45.000004	34
CTAGCGG	50	2.1827873E-11	45.000004	2
GGCGTAG	55	1.8189894E-12	45.0	1
CGTTTTT	595	0.0	43.865547	1
CGTATGG	60	3.6379788E-12	41.250004	2
TAGGGTA	210	0.0	40.714287	5