SRR2935436.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935436.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	466787
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8312	1.7806836951328981	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTC	5147	1.1026442467335207	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGC	3168	0.6786821398196607	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCG	3093	0.6626148543125665	No Hit
GAACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	1901	0.407252129986482	No Hit
GCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	1230	0.26350348231634557	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTT	1103	0.2362962121909993	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTG	952	0.2039474107033829	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTT	723	0.1548886322883885	No Hit
CGTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCT	688	0.14739056571841117	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCT	670	0.14353441719670856	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	640	0.13710750299387087	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTC	576	0.12339675269448379	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCT	519	0.11118561570909215	No Hit
CCTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGC	486	0.10411601008597068	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCAAAGAGT	483	0.10347331866568692	No Hit
CTGTCTCTTATACACATCTGACGCGCAAAGAGTCGTATGCCGTCTTCTGCT	469	0.100474092037696	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATCG	25	3.887233E-5	45.0	21
TACGGGT	25	3.887233E-5	45.0	4
TAGCCGT	25	3.887233E-5	45.0	44
GGACGTA	25	3.887233E-5	45.0	8
TAGTGCG	35	1.2098462E-7	45.0	1
AGTACGG	50	2.1827873E-11	45.0	2
CGGTCTA	65	0.0	44.999996	31
CGTTTTT	4330	0.0	44.012703	1
CGACGGT	75	0.0	42.000004	28
TCACGAC	70	0.0	41.785713	25
ACGGTCT	70	0.0	41.785713	30
CACGGGC	40	3.4523327E-7	39.375	4
GACGGTC	80	0.0	39.375	29
GACGGGT	40	3.4523327E-7	39.375	4
TGTAGCG	40	3.4523327E-7	39.375	1
CACGACG	75	0.0	39.000004	26
CGGGCTT	35	6.240318E-6	38.571426	6
TTGCGCG	35	6.240318E-6	38.571426	14
GCCTAAC	35	6.240318E-6	38.571426	10
TTTACGG	65	9.094947E-12	38.07692	2