##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935417.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 550674 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.924423524626185 33.0 31.0 34.0 30.0 34.0 2 31.983420317647102 33.0 31.0 34.0 30.0 34.0 3 32.03270174368138 33.0 31.0 34.0 30.0 34.0 4 35.75319699132336 37.0 35.0 37.0 35.0 37.0 5 35.75733192415113 37.0 35.0 37.0 35.0 37.0 6 35.68233292292717 37.0 35.0 37.0 33.0 37.0 7 35.94837962206314 37.0 35.0 37.0 35.0 37.0 8 35.74750578382128 37.0 35.0 37.0 35.0 37.0 9 37.589986089773625 39.0 37.0 39.0 35.0 39.0 10 37.07987121236884 39.0 37.0 39.0 33.0 39.0 11 37.013646912692444 39.0 37.0 39.0 33.0 39.0 12 37.025131021257586 39.0 37.0 39.0 33.0 39.0 13 36.973136556292836 39.0 37.0 39.0 33.0 39.0 14 38.043853532216886 40.0 37.0 41.0 33.0 41.0 15 38.12141847989918 40.0 37.0 41.0 33.0 41.0 16 38.08914167002619 40.0 37.0 41.0 33.0 41.0 17 38.044345656413775 40.0 37.0 41.0 33.0 41.0 18 37.82411372245648 39.0 37.0 41.0 33.0 41.0 19 37.5736769849312 39.0 37.0 41.0 33.0 41.0 20 37.42297620733864 39.0 35.0 41.0 33.0 41.0 21 37.429615344105585 39.0 35.0 41.0 33.0 41.0 22 37.541058775246334 39.0 35.0 41.0 33.0 41.0 23 37.54784863639831 39.0 35.0 41.0 33.0 41.0 24 37.50534617577732 39.0 35.0 41.0 33.0 41.0 25 37.29314984909402 39.0 35.0 41.0 33.0 41.0 26 37.31623973530619 39.0 35.0 41.0 33.0 41.0 27 37.335559695936254 39.0 35.0 41.0 33.0 41.0 28 37.19733090721552 39.0 35.0 41.0 33.0 41.0 29 37.11365889800499 39.0 35.0 41.0 33.0 41.0 30 36.92520983376735 39.0 35.0 41.0 32.0 41.0 31 36.79824723883822 39.0 35.0 41.0 32.0 41.0 32 36.51749310844529 39.0 35.0 41.0 31.0 41.0 33 36.17176587236732 39.0 35.0 41.0 30.0 41.0 34 35.806569767230705 39.0 35.0 41.0 27.0 41.0 35 35.4926417444804 39.0 35.0 41.0 25.0 41.0 36 35.37536182932188 39.0 35.0 41.0 24.0 41.0 37 35.32979766613278 39.0 35.0 41.0 23.0 41.0 38 35.20712980819868 39.0 35.0 41.0 23.0 41.0 39 35.10558333968918 39.0 35.0 41.0 23.0 41.0 40 34.91126873613063 38.0 35.0 41.0 22.0 41.0 41 34.759990484388226 38.0 34.0 40.0 21.0 41.0 42 34.74632359617487 38.0 35.0 40.0 21.0 41.0 43 34.709363434627384 38.0 34.0 40.0 21.0 41.0 44 34.590320225759704 38.0 34.0 40.0 20.0 41.0 45 34.5810080011041 38.0 34.0 40.0 20.0 41.0 46 34.48419754700603 38.0 34.0 40.0 20.0 41.0 47 34.418750476688565 38.0 34.0 40.0 20.0 41.0 48 34.34961883074196 38.0 34.0 40.0 20.0 41.0 49 34.29870667581909 38.0 34.0 40.0 20.0 41.0 50 34.19836781834624 37.0 34.0 40.0 20.0 41.0 51 33.057524052343126 36.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 5.0 10 7.0 11 8.0 12 9.0 13 16.0 14 21.0 15 39.0 16 62.0 17 103.0 18 206.0 19 369.0 20 748.0 21 1292.0 22 1897.0 23 2661.0 24 3936.0 25 6619.0 26 10333.0 27 12543.0 28 12867.0 29 11705.0 30 11431.0 31 12890.0 32 15792.0 33 21310.0 34 34534.0 35 37655.0 36 43133.0 37 60027.0 38 104635.0 39 143765.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.41206594101047 18.71506553786814 21.017516715879086 20.855351805242304 2 37.623893628535214 26.23330682036922 21.532703559637824 14.610095991457742 3 27.368824386115925 26.00885460363119 32.575897899664774 14.046423110588115 4 24.832114826557998 21.766961941184803 36.849025012984086 16.55189821927311 5 25.2617701217054 25.5759305868808 31.605813966157836 17.55648532525596 6 23.353744683787504 31.860229464256527 31.479968184443063 13.306057667512903 7 70.32890603151773 4.965369710572862 20.26625553412727 4.439468723782128 8 71.08652306083091 6.690891525657648 17.734449056973816 4.488136356537624 9 65.21099597947243 6.4395631535173266 18.98981974816316 9.359621118847086 10 36.452783316444936 25.29318616822294 24.936169130919563 13.317861384412558 11 27.44182583524917 21.376712900917784 33.205308403883244 17.976152859949806 12 24.145138502998144 19.05319662813207 36.73897805235039 20.062686816519392 13 22.988374246832063 19.283459905497626 39.392635207037195 18.335530640633117 14 18.646603979850145 24.572069863476393 37.20967396317967 19.57165219349379 15 17.941649687473895 23.19394051653065 39.93033991072758 18.93406988526787 16 21.584095127062472 23.571114670385747 35.01926729789312 19.825522904658655 17 21.320055059799444 24.368864337157735 34.85437845258719 19.456702150455623 18 21.45062232827408 23.73219000715487 34.72580873620327 20.09137892836778 19 20.928898041309377 25.49947882049997 32.576624282243216 20.99499885594744 20 22.662773256046226 25.298270846272025 34.36552297729691 17.673432920384837 21 22.252730290516713 25.710492959536857 35.07483556514381 16.961941184802622 22 21.171328226863807 21.518539099358243 36.34618667305883 20.96394600071912 23 21.068726687659122 23.74108819374076 35.86132630194997 19.32885881665014 24 22.24909837762451 23.43746027595274 34.18338254575302 20.130058800669726 25 21.316967933841074 26.579246523351387 31.929962191786792 20.17382335102075 26 20.201970675935307 24.293683740289175 33.15736715370618 22.346978430069335 27 21.654735832815785 24.089207044458245 33.08254974812684 21.173507374599126 28 19.28709181838983 25.347664861605963 33.94694501647073 21.418298303533486 29 21.03077319793562 25.708495407446147 32.58370651238301 20.677024882235223 30 21.922952599904843 26.372772275429746 32.590243955588974 19.11403116907644 31 24.100465974424072 23.690241413249943 31.004005999920096 21.20528661240589 32 24.70681383177706 24.480545658592927 30.56018624449311 20.252454265136905 33 25.19893802867032 23.380076052255962 30.333191688730537 21.087794230343178 34 24.293865335933784 24.811412923072453 31.443285864231836 19.451435876761934 35 22.290320588950998 25.643847357964965 31.81065385327798 20.255178199806057 36 23.47014749198255 26.61320490889347 31.384993662312006 18.531653936811978 37 22.33444833059124 26.184820783258335 31.326883056036785 20.15384783011364 38 23.598535612721864 25.13610593563524 29.851418443580048 21.413940008062845 39 23.871655462215394 23.811728899494074 30.101657241852713 22.21495839643782 40 23.39387732124633 23.905250656468255 32.71318420698998 19.987687815295438 41 21.237610637146478 26.033006824364325 31.615801726611387 21.113580811877807 42 20.893486890610415 25.60280674228309 32.873896352469885 20.62981001463661 43 22.21532158772704 24.575701776368593 31.259692667531063 21.949283968373305 44 22.43051242658996 24.52267584814246 30.103473198298815 22.943338526968766 45 21.472050614338066 23.70349789530648 30.199537294297535 24.62491419605792 46 23.304532264098178 24.612020905290606 30.027021431917976 22.05642539869324 47 20.716431137115606 24.52194946556402 33.543076302857955 21.218543094462422 48 20.99445406901361 24.408996974616564 31.61507534403295 22.98147361233688 49 20.918365493921996 23.484675143551357 33.74337629886285 21.8535830636638 50 20.56970185627068 23.24260814928615 33.55415363717917 22.63353635726401 51 20.252454265136905 23.268576326465386 31.901814866872236 24.577154541525477 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 250.0 1 518.5 2 787.0 3 9914.0 4 19041.0 5 12679.5 6 6318.0 7 5998.5 8 5679.0 9 5569.5 10 5460.0 11 5234.0 12 5008.0 13 4828.0 14 4648.0 15 4299.0 16 3950.0 17 3688.0 18 3426.0 19 3198.5 20 2971.0 21 2978.5 22 2986.0 23 3026.5 24 3067.0 25 3373.0 26 4247.0 27 4815.0 28 5682.0 29 6549.0 30 7427.5 31 8306.0 32 9477.0 33 10648.0 34 12199.5 35 13751.0 36 14856.0 37 15961.0 38 17110.0 39 18259.0 40 19517.5 41 20776.0 42 22084.5 43 23393.0 44 25920.0 45 28447.0 46 43909.5 47 59372.0 48 51172.0 49 42972.0 50 42705.5 51 42439.0 52 37883.5 53 33328.0 54 30860.5 55 28393.0 56 27331.0 57 26269.0 58 24910.0 59 23551.0 60 22475.0 61 21399.0 62 19586.0 63 17773.0 64 15209.5 65 12646.0 66 10647.5 67 8649.0 68 7345.5 69 6042.0 70 4987.5 71 3933.0 72 3178.0 73 2423.0 74 2072.5 75 1243.0 76 764.0 77 579.0 78 394.0 79 301.5 80 209.0 81 159.0 82 109.0 83 85.5 84 62.0 85 42.5 86 23.0 87 20.0 88 17.0 89 9.5 90 2.0 91 3.0 92 4.0 93 3.5 94 3.0 95 2.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 550674.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.74076771580481 #Duplication Level Percentage of deduplicated Percentage of total 1 68.83323321934772 28.04318765717264 2 9.59442457974584 7.817684463404667 3 5.278587694456624 6.451611453820888 4 3.7738888741067083 6.150045200209661 5 2.8729771242369417 5.852364683567906 6 2.2178284868563165 5.421362112990482 7 1.7267869323283007 4.924543771327211 8 1.3710459895238352 4.468597294950105 9 1.0226779350514195 3.7498215780007906 >10 3.2553269895064636 17.697369580364803 >50 0.027729200349297458 0.7570871809093306 >100 0.0183370518265039 1.4194245812069124 >500 0.0035779613320007612 1.0704902971233132 >1k 0.0026834709990005714 2.5906776245956205 >5k 4.4724516650009516E-4 1.5876054398017752 >10k+ 4.4724516650009516E-4 1.9981270805539155 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10966 1.9913778387939143 No Hit GAATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC 8713 1.58224285148745 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCG 3910 0.7100389704253333 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGC 3503 0.636129543069039 No Hit GAACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT 2752 0.49975121396688427 No Hit GCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTGC 1474 0.267671980155228 TruSeq Adapter, Index 21 (95% over 23bp) GAATGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT 1402 0.25459709374330364 No Hit CGTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTT 1177 0.21373807370604023 No Hit CGCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCTG 899 0.16325448450444363 No Hit GAATGACTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT 893 0.1621649106367833 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTC 802 0.14563970697726786 No Hit CGTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTC 774 0.1405550289281862 No Hit ACCATACGGAAAGAGTTCCGAACCCGCATGGTTATGAACAATGGACTCAAC 719 0.1305672684746329 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCT 651 0.11821876464114885 No Hit CGTCTGTCTCTTATACACATCTGACGCAAGCGGTTTCGTATGCCGTCTTCT 628 0.11404206481511747 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.44786933830179E-4 0.0 0.0 0.05883698885365933 0.0 2 5.44786933830179E-4 0.0 0.0 0.46397687197870247 0.0 3 5.44786933830179E-4 0.0 0.0 0.7754134024849548 0.0 4 5.44786933830179E-4 0.0 0.0 1.6027631593283866 0.0 5 7.263825784402387E-4 0.0 0.0 3.898495298488761 0.0 6 7.263825784402387E-4 0.0 0.0 5.185463631840254 0.0 7 7.263825784402387E-4 0.0 0.0 6.08726760297381 0.0 8 7.263825784402387E-4 0.0 0.0 7.104929595368585 0.0 9 9.079782230502983E-4 0.0 0.0 7.72852903895953 0.0 10 9.079782230502983E-4 0.0 0.0 9.203085673193215 0.0 11 0.001089573867660358 0.0 0.0 9.882071788390228 0.0 12 0.001089573867660358 0.0 0.0 11.067346560760086 0.0 13 0.001089573867660358 0.0 0.0 11.418370941791332 0.0 14 0.001089573867660358 0.0 0.0 11.665885805394844 0.0 15 0.001089573867660358 0.0 0.0 11.921754068650417 0.0 16 0.001089573867660358 0.0 0.0 12.155467663263565 0.0 17 0.001089573867660358 0.0 0.0 12.410791139585308 0.0 18 0.001089573867660358 0.0 0.0 12.685182158591108 0.0 19 0.001089573867660358 0.0 0.0 12.987357311222247 0.0 20 0.001089573867660358 0.0 0.0 13.220162927612344 0.0 21 0.0012711695122704177 0.0 0.0 13.441164827102787 0.0 22 0.0012711695122704177 0.0 0.0 13.715555846108588 0.0 23 0.0012711695122704177 0.0 0.0 13.962525922778267 0.0 24 0.0012711695122704177 0.0 0.0 14.190610052408504 0.0 25 0.0012711695122704177 0.0 0.0 14.39436036566099 0.0 26 0.0012711695122704177 0.0 0.0 14.589575683616804 0.0 27 0.0014527651568804773 0.0 0.0 14.825468425965271 0.0 28 0.0014527651568804773 0.0 0.0 15.056276490264658 0.0 29 0.0014527651568804773 0.0 0.0 15.27509924201978 0.0 30 0.0014527651568804773 0.0 0.0 15.58145109447695 0.0 31 0.001634360801490537 0.0 0.0 15.836956166443304 0.0 32 0.001634360801490537 0.0 0.0 16.09082687760817 0.0 33 0.001634360801490537 0.0 0.0 16.323269302709043 0.0 34 0.001634360801490537 0.0 0.0 16.571147357601774 0.0 35 0.001634360801490537 0.0 0.0 16.846809546119847 0.0 36 0.001634360801490537 0.0 0.0 17.110668017738263 0.0 37 0.001634360801490537 0.0 0.0 17.37398170242285 0.0 38 0.001634360801490537 0.0 0.0 17.722100553140333 0.0 39 0.001634360801490537 0.0 0.0 18.173547325640943 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 5605 0.0 44.03657 1 TATGGGC 95 0.0 40.263157 4 CGGTCTA 45 1.9252184E-8 40.000004 31 TAGCGCG 40 3.4538425E-7 39.375004 1 GTTTTTT 6425 0.0 39.22179 2 CCGAACC 75 0.0 39.0 18 CGGGTAT 35 6.2423605E-6 38.57143 6 GCGATAT 35 6.2423605E-6 38.57143 9 TAGTGCG 35 6.2423605E-6 38.57143 1 GCGTAAG 35 6.2423605E-6 38.57143 1 GCGCGAC 90 0.0 37.500004 9 TAACGTC 30 1.1391499E-4 37.499996 32 GCCGATT 60 1.546141E-10 37.499996 9 AGTTGCG 30 1.1391499E-4 37.499996 1 CCGATGA 285 0.0 37.105263 18 TACGGCT 450 0.0 37.0 7 CGTAAGG 55 2.743036E-9 36.81818 2 TCCGAAC 80 0.0 36.562504 17 GGGCGAT 745 0.0 36.543625 7 GAATCTG 1220 0.0 36.516396 1 >>END_MODULE