SRR2935415.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935415.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	388468
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	10516	2.7070440808509324	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	10253	2.639342236683588	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	10228	2.6329067001657793	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	3029	0.7797296044976677	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	2459	0.6329993718916359	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2196	0.5652975277242913	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	1929	0.4965659977140974	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACGATT	1739	0.44765592017875344	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTC	1587	0.4085278581504783	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTA	1354	0.34854865780450384	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTT	1130	0.29088625060494044	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	698	0.179680179577211	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	683	0.17581885766652594	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	473	0.12176035091693524	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATG	433	0.11146349248844177	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGACGA	60	0.0	45.000004	18
GTATTAT	20	7.027515E-4	45.0	12
CAACGAG	20	7.027515E-4	45.0	14
TTGTCGT	20	7.027515E-4	45.0	28
TAACGGT	20	7.027515E-4	45.0	25
CCCGTCC	20	7.027515E-4	45.0	32
TACGCGG	25	3.8860217E-5	45.0	2
TGTAGCG	40	6.7957444E-9	45.0	1
GACGAAT	50	2.1827873E-11	45.0	20
CGCCGAT	45	3.8380676E-10	45.0	31
GATTAAT	45	3.8380676E-10	45.0	20
TATCGCG	20	7.027515E-4	45.0	1
TGTAACG	20	7.027515E-4	45.0	1
CCCATCG	20	7.027515E-4	45.0	40
ACGGTAT	20	7.027515E-4	45.0	27
CTACGGG	110	0.0	42.954544	3
CGATGAA	710	0.0	42.781693	19
CCGATGA	700	0.0	42.42857	18
CGTTTTT	1260	0.0	41.964287	1
TACGGCT	1420	0.0	41.355637	7