##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935413.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 475004 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.713417150171367 31.0 31.0 34.0 30.0 34.0 2 31.733158036563903 31.0 31.0 34.0 30.0 34.0 3 31.79186912110214 33.0 31.0 34.0 30.0 34.0 4 35.53634074660424 37.0 35.0 37.0 33.0 37.0 5 35.57539304932169 37.0 35.0 37.0 33.0 37.0 6 35.54096386556745 37.0 35.0 37.0 33.0 37.0 7 35.77362295896456 37.0 35.0 37.0 35.0 37.0 8 35.653691337336106 37.0 35.0 37.0 33.0 37.0 9 37.421638554622696 39.0 37.0 39.0 34.0 39.0 10 36.74632845197093 39.0 37.0 39.0 32.0 39.0 11 36.757282043940684 39.0 35.0 39.0 32.0 39.0 12 36.82282464989768 39.0 35.0 39.0 33.0 39.0 13 36.84507077835134 39.0 37.0 39.0 33.0 39.0 14 37.92036698638327 40.0 37.0 41.0 33.0 41.0 15 37.9951705669847 40.0 37.0 41.0 33.0 41.0 16 37.93204057228992 40.0 37.0 41.0 33.0 41.0 17 37.87185792119645 40.0 37.0 41.0 33.0 41.0 18 37.729109649602954 39.0 36.0 41.0 33.0 41.0 19 37.609818022585074 39.0 37.0 41.0 33.0 41.0 20 37.557715303450074 39.0 35.0 41.0 33.0 41.0 21 37.526875563153155 39.0 35.0 41.0 33.0 41.0 22 37.617055856371735 39.0 35.0 41.0 33.0 41.0 23 37.64004303121658 39.0 35.0 41.0 33.0 41.0 24 37.63368308477402 39.0 35.0 41.0 33.0 41.0 25 37.32022046130138 39.0 35.0 41.0 32.0 41.0 26 37.469031839731876 39.0 35.0 41.0 33.0 41.0 27 37.455834056134265 39.0 35.0 41.0 33.0 41.0 28 37.13113152731346 39.0 35.0 41.0 32.0 41.0 29 36.90132925196419 39.0 35.0 41.0 31.0 41.0 30 36.78611759058871 39.0 35.0 41.0 31.0 41.0 31 36.785117599009695 39.0 35.0 41.0 31.0 41.0 32 36.68818788894409 39.0 35.0 41.0 31.0 41.0 33 36.438482623304225 39.0 35.0 41.0 30.0 41.0 34 36.31504366279021 39.0 35.0 41.0 30.0 41.0 35 36.22742545325934 39.0 35.0 41.0 29.0 41.0 36 36.11731269631414 39.0 35.0 41.0 29.0 41.0 37 36.05248166331231 39.0 35.0 41.0 28.0 41.0 38 35.88303677442716 39.0 35.0 41.0 27.0 41.0 39 35.75842729745434 39.0 35.0 41.0 26.0 41.0 40 35.68569738360098 39.0 35.0 41.0 26.0 41.0 41 35.501269462993996 39.0 35.0 41.0 25.0 41.0 42 35.56096369714781 39.0 35.0 41.0 26.0 41.0 43 35.415604921221714 39.0 35.0 41.0 24.0 41.0 44 35.31827310927908 39.0 35.0 40.0 24.0 41.0 45 35.30641636702007 39.0 35.0 40.0 25.0 41.0 46 35.12091898173489 38.0 34.0 40.0 24.0 41.0 47 35.1151274515583 38.0 34.0 40.0 24.0 41.0 48 34.99190743656896 38.0 34.0 40.0 24.0 41.0 49 34.729520172461704 38.0 34.0 40.0 23.0 41.0 50 34.49058113194836 38.0 34.0 40.0 22.0 41.0 51 33.245804245858984 36.0 32.0 40.0 19.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 2.0 9 4.0 10 7.0 11 1.0 12 4.0 13 5.0 14 14.0 15 11.0 16 33.0 17 74.0 18 173.0 19 335.0 20 697.0 21 1134.0 22 1735.0 23 2457.0 24 3559.0 25 5333.0 26 7377.0 27 8244.0 28 8389.0 29 8524.0 30 9344.0 31 11217.0 32 13684.0 33 17974.0 34 28557.0 35 34365.0 36 37991.0 37 55220.0 38 96445.0 39 122051.0 40 44.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.707025625047365 20.324881474682318 24.4204259332553 14.547666967015013 2 33.69697939385773 26.88861567481537 23.82064151038728 15.593763420939613 3 28.728600180209007 26.203568812052108 30.0069052050088 15.060925802730083 4 25.52673240646395 24.332637198844644 32.85467069750992 17.285959697181497 5 25.702941448914114 28.19618361108538 28.654916590176082 17.445958349824423 6 23.695168882788355 34.58476139148302 27.568188899461898 14.151880826266726 7 75.95009726233884 5.439743665316503 14.471036033380772 4.1391230389638825 8 77.53871546344872 6.85236334851917 11.50306102685451 4.10586016117759 9 71.02424400636626 8.174036429166913 13.157152360822225 7.6445672036446 10 34.98665274397689 32.568988892725116 19.644045102778083 12.80031326051991 11 26.206516155653425 27.201244621097924 29.751538934408973 16.84070028883967 12 23.472433916345967 22.092024488214836 34.83696979393858 19.59857180150062 13 24.392426169042785 23.83769399836633 34.577393032479726 17.192486800111155 14 19.148049279585013 30.273850325470942 31.36794637518842 19.210154019755624 15 17.477537031267104 26.46546134348342 37.650630310481596 18.406371314767874 16 19.79920169093313 28.17260486227484 31.638680937423686 20.389512509368345 17 20.85982433832136 25.520206145632457 30.390059873180014 23.229909642866165 18 24.243374792633325 24.88757989406405 30.084378236814846 20.784667076487775 19 23.322329917221747 27.08229825433049 28.787968101321255 20.80740372712651 20 23.638958829820382 25.834519288258623 29.862064319458366 20.664457562462633 21 23.852009667287014 27.74966105548585 30.15743025321892 18.24089902400822 22 20.997507389411457 26.356620154777644 30.27321875184209 22.37265370396881 23 19.796464871874765 27.281875521048242 30.124167375432627 22.797492231644366 24 20.272250338944513 25.659783917609115 30.579110912750206 23.488854830696162 25 19.77183350034947 29.373857904354487 28.641021970341303 22.213286624954737 26 19.72004446278347 26.82924775370313 29.101649670318565 24.349058113194836 27 21.726553881651522 26.089043460686646 29.096176032201832 23.088226625459995 28 21.564871032664986 26.28188394202996 31.113001153674496 21.040243871630555 29 21.82781618681106 25.2507347306549 31.234473814957347 21.686975267576695 30 23.349277058719505 25.87157160781804 29.722697072024655 21.0564542614378 31 23.337698208857187 27.664188091047652 27.406716575018315 21.591397125076842 32 23.152015561974217 28.48312856312789 29.42080487743261 18.944050997465283 33 21.71392240907445 27.145876666301756 29.81469629729434 21.325504627329455 34 23.623801062727892 26.314936295273306 30.543953314077356 19.51730932792145 35 20.714772928227973 26.263147257707303 31.135316755227326 21.8867630588374 36 23.509696760448335 27.208191931015318 29.516804069018367 19.76530723951798 37 21.388240941128917 27.693661527060826 30.06227315980497 20.855824372005287 38 21.646765079873013 27.53176815353134 28.549654318700473 22.271812447895176 39 24.245480038062837 25.274524004008388 29.075965676078518 21.404030281850257 40 23.648221909710234 25.35831277210297 30.84816127864186 20.145304039544932 41 21.48445065725762 25.68294161733375 29.77911764953558 23.053490075873047 42 23.210330860371702 25.891571439398405 29.970273934535292 20.927823765694605 43 23.295172251181043 26.213252941027864 28.069237311685796 22.422337496105296 44 22.225286523902955 25.73999376847353 27.888396729290697 24.146322978332815 45 20.76908826030939 25.23115594816044 28.003764178827968 25.995991612702205 46 22.224444425731154 27.655135535700754 26.99956210895066 23.120857929617436 47 20.541090180293217 25.056420577510924 30.718899209269818 23.683590032926038 48 21.234136975688624 24.900632415727024 29.505435743699 24.359794864885348 49 22.143813525780836 23.803799546951186 31.457840355028587 22.59454657223939 50 20.595826561460534 24.308847925491154 31.850258103089658 23.245067409958654 51 21.69118575843572 23.854114912716526 28.975966518176687 25.47873281067107 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 244.0 1 391.5 2 539.0 3 3840.0 4 7141.0 5 4800.5 6 2460.0 7 2445.5 8 2431.0 9 2497.0 10 2563.0 11 2533.5 12 2504.0 13 2532.5 14 2561.0 15 2454.5 16 2348.0 17 2294.0 18 2240.0 19 2106.0 20 1972.0 21 1978.0 22 1984.0 23 2067.5 24 2151.0 25 2603.5 26 3526.0 27 3996.0 28 4643.5 29 5291.0 30 6638.5 31 7986.0 32 8856.5 33 9727.0 34 11109.0 35 12491.0 36 13770.5 37 15050.0 38 16154.0 39 17258.0 40 19783.0 41 22308.0 42 24665.5 43 27023.0 44 30379.0 45 33735.0 46 44068.0 47 54401.0 48 50277.0 49 46153.0 50 44288.0 51 42423.0 52 37875.5 53 33328.0 54 29185.5 55 25043.0 56 23046.5 57 21050.0 58 20114.5 59 19179.0 60 17338.0 61 15497.0 62 13546.0 63 11595.0 64 9133.0 65 6671.0 66 5292.5 67 3914.0 68 3112.5 69 2311.0 70 1964.5 71 1618.0 72 1436.5 73 1255.0 74 996.0 75 555.0 76 373.0 77 291.5 78 210.0 79 152.5 80 95.0 81 79.5 82 64.0 83 40.0 84 16.0 85 9.5 86 3.0 87 5.0 88 7.0 89 4.5 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 475004.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 40.965039067631 #Duplication Level Percentage of deduplicated Percentage of total 1 76.20560390172264 31.217655410064815 2 8.70662597086032 7.133345460870874 3 3.34921838310941 4.116025857303147 4 1.9606447264626448 3.2127155126914775 5 1.4393802189228728 2.9482133450675376 6 1.1054372557616399 2.7170568221454228 7 0.9270679627411756 2.658416271842894 8 0.7576942021492815 2.483117807389025 9 0.6453725301567022 2.3793939819940655 >10 4.815303983184933 33.38930101777587 >50 0.0634179787422849 1.747998839652883 >100 0.017530172985669994 1.4204074669725066 >500 0.0030935599386476454 0.782121762111404 >1k 0.0036091532617555863 3.794230444118083 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4461 0.9391499861053803 No Hit GAATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTC 4211 0.8865188503675758 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGC 2628 0.5532584988757989 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCG 2622 0.5519953516180917 No Hit GAATGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTT 1777 0.37410211282431305 No Hit GCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC 1238 0.260629384173607 TruSeq Adapter, Index 22 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCT 1027 0.2162087056109001 No Hit CGCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTG 768 0.16168284898653484 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTT 646 0.13599885474648635 No Hit CCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGC 636 0.13389360931697417 TruSeq Adapter, Index 22 (95% over 21bp) CTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCTGCT 571 0.12020951402514504 TruSeq Adapter, Index 20 (95% over 22bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 546 0.11494640045136462 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCT 536 0.11284115502185246 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTC 495 0.10420964876085254 No Hit CGTCTGTCTCTTATACACATCTGACGCGCGTATTGTCGTATGCCGTCTTCT 479 0.10084125607363306 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0012631472577073035 0.0 0.0 0.13115679025860835 0.0 2 0.0012631472577073035 0.0 0.0 0.6732574883579928 0.0 3 0.0012631472577073035 0.0 0.0 1.065885760962013 0.0 4 0.0012631472577073035 0.0 0.0 1.6825121472661282 0.0 5 0.0012631472577073035 0.0 0.0 3.4744970568668894 0.0 6 0.0012631472577073035 0.0 0.0 4.704381436787901 0.0 7 0.0012631472577073035 0.0 0.0 5.50500627363138 0.0 8 0.0012631472577073035 0.0 0.0 6.598470749720002 0.0 9 0.0012631472577073035 0.0 0.0 7.036151274515583 0.0 10 0.0012631472577073035 0.0 0.0 8.376771564028935 0.0 11 0.0012631472577073035 0.0 0.0 9.366236915899655 0.0 12 0.0012631472577073035 0.0 0.0 10.79717223433908 0.0 13 0.0012631472577073035 0.0 0.0 11.410009178870073 0.0 14 0.0012631472577073035 0.0 0.0 11.69505941002602 0.0 15 0.0012631472577073035 0.0 0.0 12.043267004067333 0.0 16 0.0012631472577073035 0.0 0.0 12.532526041885964 0.0 17 0.0012631472577073035 0.0 0.0 13.1702048824852 0.0 18 0.0012631472577073035 0.0 0.0 13.915461764532509 0.0 19 0.0012631472577073035 0.0 0.0 14.415878603127553 0.0 20 0.0012631472577073035 0.0 0.0 14.863874830527743 0.0 21 0.0012631472577073035 0.0 0.0 15.353765441975225 0.0 22 0.0012631472577073035 0.0 0.0 15.92681324788844 0.0 23 0.0012631472577073035 0.0 0.0 16.48070332039309 0.0 24 0.0014736718006585208 0.0 0.0 16.926173253277867 0.0 25 0.0014736718006585208 0.0 0.0 17.320064673139594 0.0 26 0.0014736718006585208 0.0 0.0 17.728692811007907 0.0 27 0.0014736718006585208 0.0 0.0 18.14616297968017 0.0 28 0.0014736718006585208 0.0 0.0 18.526791353335973 0.0 29 0.0014736718006585208 0.0 0.0 18.947629914695455 0.0 30 0.0014736718006585208 0.0 0.0 19.44994147417706 0.0 31 0.0014736718006585208 0.0 0.0 19.936463692937323 0.0 32 0.0014736718006585208 0.0 0.0 20.383617822165707 0.0 33 0.0014736718006585208 0.0 0.0 20.90403449234112 0.0 34 0.0014736718006585208 0.0 0.0 21.464661350220208 0.0 35 0.0014736718006585208 0.0 0.0 21.95434143712474 0.0 36 0.0014736718006585208 0.0 0.0 22.389495667404905 0.0 37 0.0014736718006585208 0.0 0.0 22.83475507574673 0.0 38 0.001684196343609738 0.0 0.0 23.28611969583414 0.0 39 0.001684196343609738 0.0 0.0 23.801062727892816 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTACGG 30 2.162802E-6 45.000004 2 TCACGAC 35 1.209919E-7 45.0 25 CGACGGT 40 6.8012014E-9 45.0 28 ATTAACG 20 7.0291024E-4 45.0 1 TCGATAG 20 7.0291024E-4 45.0 1 TCTACGG 20 7.0291024E-4 45.0 2 TGCGAAG 20 7.0291024E-4 45.0 1 GGTGCGT 20 7.0291024E-4 45.0 1 TATAGCG 20 7.0291024E-4 45.0 1 CGGTCTA 40 6.8012014E-9 45.0 31 TGTACCG 25 3.8873375E-5 45.0 1 GCCACGG 35 1.209919E-7 45.0 2 CGTTTTT 2635 0.0 43.37761 1 ACGGGTA 65 0.0 41.53846 5 CTAACGG 65 0.0 41.53846 2 ATTGCGG 65 0.0 41.53846 2 GCGATAT 60 3.6379788E-12 41.250004 9 CGAATAT 115 0.0 41.086956 14 ACGGTCT 50 1.0786607E-9 40.5 30 CGTGCGG 95 0.0 40.263157 2 >>END_MODULE