SRR2935408.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935408.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	348519
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTC	2364	0.6782987441143812	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGC	2029	0.582177729191235	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCG	1983	0.5689790226644745	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1679	0.48175278822675377	No Hit
GCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	1314	0.37702392122093775	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTT	856	0.24561071275884527	No Hit
CCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	753	0.21605708727501227	No Hit
CTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGCT	717	0.20572766477580848	Illumina Single End Adapter 2 (95% over 21bp)
GAACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCT	512	0.14690734221089813	No Hit
CGCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTG	511	0.14662041380814245	No Hit
TCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCTTCTGC	478	0.13715177651720567	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTCT	405	0.11620600311604247	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCTTGTCGATCGTATGCCGTC	358	0.10272036818652641	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATAGCGG	55	1.8189894E-12	45.000004	2
CAATTGG	20	7.026514E-4	45.000004	2
CCGCTCA	20	7.026514E-4	45.000004	28
GCCGCAT	20	7.026514E-4	45.000004	19
TCAGCGA	20	7.026514E-4	45.000004	18
CGGGCTA	20	7.026514E-4	45.000004	6
CGCCAGT	20	7.026514E-4	45.000004	26
TATTGCG	50	2.1827873E-11	45.0	1
TCCGGGA	35	1.2086639E-7	45.0	4
TCGTTAG	30	2.161134E-6	44.999996	1
TAGCGTG	30	2.161134E-6	44.999996	36
CCGTACG	30	2.161134E-6	44.999996	1
TAGTGCG	30	2.161134E-6	44.999996	1
ACGACAG	30	2.161134E-6	44.999996	1
CGTTTTT	1190	0.0	42.73109	1
CGTTAGG	80	0.0	42.187504	2
ACAAGCG	75	0.0	42.0	14
TACACGC	70	0.0	41.785713	35
ACCCGCA	50	1.0768417E-9	40.5	32
CCGCACT	50	1.0768417E-9	40.5	34