Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935407.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 769390 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 44 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 14436 | 1.8762916076372191 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC | 7916 | 1.028867024525923 | No Hit |
CGTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTT | 3498 | 0.4546458883011217 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCG | 3442 | 0.44736739494924554 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGC | 3224 | 0.4190332601151561 | No Hit |
CGTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC | 2594 | 0.3371502099065493 | No Hit |
GAACTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCT | 2310 | 0.3002378507648917 | No Hit |
GAATGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTT | 2206 | 0.2867206488256931 | No Hit |
CGTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCT | 1966 | 0.25552710588908095 | No Hit |
CGTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCT | 1826 | 0.23733087250939056 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG | 1819 | 0.23642106084040604 | No Hit |
GCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC | 1790 | 0.23265184106889872 | No Hit |
CCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC | 1077 | 0.1399810239280469 | No Hit |
CTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGCT | 905 | 0.11762565149014154 | Illumina Single End Adapter 2 (95% over 21bp) |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 901 | 0.11710575910786467 | No Hit |
GAATGACTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCT | 868 | 0.1128166469540805 | No Hit |
CGTTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTC | 858 | 0.11151691599838834 | No Hit |
GAATGATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTC | 826 | 0.10735777694017337 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGATAG | 25 | 3.8895985E-5 | 45.0 | 1 |
TATTCGA | 20 | 7.031832E-4 | 45.0 | 18 |
CGTTTTT | 7995 | 0.0 | 43.930584 | 1 |
TTAGGCG | 55 | 6.002665E-11 | 40.909092 | 1 |
CCATACG | 55 | 6.002665E-11 | 40.909092 | 2 |
TGCGTAG | 45 | 1.9268555E-8 | 40.0 | 1 |
CGTTCTG | 340 | 0.0 | 39.705883 | 1 |
CGTATGG | 115 | 0.0 | 39.130432 | 2 |
TGCTACG | 35 | 6.2455947E-6 | 38.57143 | 1 |
CGTTTTC | 315 | 0.0 | 38.57143 | 1 |
GTTTTTT | 9110 | 0.0 | 38.47969 | 2 |
CGTAAGG | 100 | 0.0 | 38.25 | 2 |
CGTTAGG | 65 | 9.094947E-12 | 38.07692 | 2 |
GCGTAAG | 65 | 9.094947E-12 | 38.07692 | 1 |
CGGTCTA | 60 | 1.546141E-10 | 37.499996 | 31 |
CCGAACC | 60 | 1.546141E-10 | 37.499996 | 18 |
CGTTTCT | 405 | 0.0 | 37.22222 | 1 |
AGGGCGA | 490 | 0.0 | 37.19388 | 6 |
TAGCGCG | 50 | 4.8754373E-8 | 36.0 | 1 |
GCGTTAG | 50 | 4.8754373E-8 | 36.0 | 1 |