##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935407.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 769390 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.85086627068197 33.0 31.0 34.0 30.0 34.0 2 31.915000194959642 33.0 31.0 34.0 30.0 34.0 3 31.967398848438375 33.0 31.0 34.0 30.0 34.0 4 35.6940511314158 37.0 35.0 37.0 33.0 37.0 5 35.71295051924252 37.0 35.0 37.0 35.0 37.0 6 35.65734283003418 37.0 35.0 37.0 33.0 37.0 7 35.937911852246586 37.0 35.0 37.0 35.0 37.0 8 35.77687908602919 37.0 35.0 37.0 35.0 37.0 9 37.60157917311117 39.0 37.0 39.0 35.0 39.0 10 37.045972783633786 39.0 37.0 39.0 33.0 39.0 11 36.98173748034157 39.0 37.0 39.0 33.0 39.0 12 37.044598968013624 39.0 37.0 39.0 33.0 39.0 13 37.028570685868026 39.0 37.0 39.0 33.0 39.0 14 38.03273892304293 40.0 37.0 41.0 33.0 41.0 15 38.13013556193868 40.0 37.0 41.0 33.0 41.0 16 38.079793082831856 40.0 37.0 41.0 33.0 41.0 17 38.063331990278016 40.0 37.0 41.0 33.0 41.0 18 37.84457557285642 39.0 37.0 41.0 33.0 41.0 19 37.60474791718114 39.0 37.0 41.0 33.0 41.0 20 37.49468669985313 39.0 35.0 41.0 33.0 41.0 21 37.44617814112479 39.0 35.0 41.0 33.0 41.0 22 37.57713643275842 39.0 35.0 41.0 33.0 41.0 23 37.599377428872224 39.0 35.0 41.0 33.0 41.0 24 37.572047986066885 39.0 35.0 41.0 33.0 41.0 25 37.3088706637726 39.0 35.0 41.0 33.0 41.0 26 37.37203498875733 39.0 35.0 41.0 33.0 41.0 27 37.385346833205524 39.0 35.0 41.0 33.0 41.0 28 37.21041474414796 39.0 35.0 41.0 33.0 41.0 29 37.145451591520555 39.0 35.0 41.0 33.0 41.0 30 36.97194400759043 39.0 35.0 41.0 32.0 41.0 31 36.86480588518177 39.0 35.0 41.0 31.0 41.0 32 36.670110087211945 39.0 35.0 41.0 31.0 41.0 33 36.300233951572025 39.0 35.0 41.0 30.0 41.0 34 36.01345611458428 39.0 35.0 41.0 29.0 41.0 35 35.83388138655298 39.0 35.0 41.0 27.0 41.0 36 35.69221591130636 39.0 35.0 41.0 25.0 41.0 37 35.63645875303812 39.0 35.0 41.0 25.0 41.0 38 35.507385071290244 39.0 35.0 41.0 24.0 41.0 39 35.42234497459026 39.0 35.0 41.0 24.0 41.0 40 35.27539999220161 39.0 35.0 41.0 23.0 41.0 41 35.09952819766308 39.0 35.0 41.0 22.0 41.0 42 35.153747774210736 39.0 35.0 41.0 23.0 41.0 43 35.10572791432173 39.0 35.0 41.0 23.0 41.0 44 34.9973043579979 39.0 35.0 41.0 22.0 41.0 45 34.983230871209656 39.0 35.0 40.0 23.0 41.0 46 34.91294921951156 38.0 35.0 40.0 23.0 41.0 47 34.847832698631386 38.0 34.0 40.0 22.0 41.0 48 34.755076099247454 38.0 34.0 40.0 22.0 41.0 49 34.698090695226085 38.0 34.0 40.0 22.0 41.0 50 34.59244596368552 38.0 34.0 40.0 21.0 41.0 51 33.457913411923734 37.0 32.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 5.0 9 4.0 10 11.0 11 10.0 12 8.0 13 18.0 14 22.0 15 33.0 16 66.0 17 131.0 18 287.0 19 492.0 20 918.0 21 1453.0 22 2163.0 23 3248.0 24 5191.0 25 8896.0 26 14032.0 27 17055.0 28 16931.0 29 15509.0 30 15689.0 31 17326.0 32 21446.0 33 29062.0 34 45422.0 35 49904.0 36 58939.0 37 83131.0 38 151839.0 39 210056.0 40 92.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.00983896333459 19.531446990472972 22.583215274438192 20.87549877175425 2 37.889106954860345 24.461976370891225 22.916596264573233 14.732320409675198 3 27.27381432043567 23.836545835012153 34.39179089928385 14.497848945268329 4 24.33200327532201 22.497692977553648 36.78615526585997 16.38414848126438 5 24.10585008903157 25.84761954275465 32.688623454944825 17.357906913268952 6 23.073993683307556 30.493507843876316 32.42087887807224 14.011619594743888 7 71.62232417889497 4.669543404515266 19.111503918688832 4.596628497900934 8 73.11532512769857 5.283406334888678 17.01815724145102 4.583111295961736 9 66.80149209113713 6.389867297469423 18.9110854053211 7.897555206072343 10 34.40231872002496 28.275646941083192 24.44949895371658 12.872535385175269 11 24.559716138759278 21.71876421580733 35.592872275438985 18.12864736999441 12 22.672766737285382 19.275919884583892 37.943695654999416 20.107617723131312 13 22.177569243166666 19.86222851869663 39.94333173033182 18.016870507804885 14 17.97618892889172 24.43624169796852 38.07574832009774 19.51182105304202 15 17.15098974512276 23.954041513406725 40.895644601567476 17.999324139903038 16 21.512496913138982 24.489140747865193 35.61587751335474 18.382484825641093 17 21.02743732047466 24.757665163311195 34.725431835610024 19.489465680604116 18 21.043164065038535 24.126645784322644 35.5020210816361 19.328169069002715 19 20.49831684841238 26.407803584657973 33.0134262207723 20.080453346157345 20 20.5248313599085 26.910149599033 33.890094750386666 18.674924290671832 21 20.975448082246974 26.087939796462134 35.53100508194804 17.405607039342854 22 19.713149378078736 22.68927332042267 36.55246364002652 21.045113661472076 23 18.994268186485396 24.48433174332913 36.27432121550839 20.24707885467708 24 20.191970262155735 24.27689468280066 35.154343050988444 20.37679200405516 25 20.92839782165092 26.201926201276336 32.65963945463289 20.210036522439857 26 19.1217717932388 25.084547498667774 32.983012516409104 22.81066819168432 27 20.063426870637777 24.164987847515565 33.45780423452345 22.313781047323204 28 18.959955289255124 24.026826446925487 33.95833062556051 23.05488763825888 29 19.701451799477507 23.27766152406452 32.774665644211645 24.246221032246325 30 20.037822170810642 23.09985832932583 33.41374335512549 23.44857614473804 31 20.176503463782996 22.674326414432215 33.56815139266172 23.58101872912307 32 21.10685088186745 23.60597356347236 32.088017780319475 23.199157774340712 33 20.072005094945347 24.69358842719557 31.71187564174216 23.52253083611692 34 19.22951948946568 24.948595640702376 33.880476741314546 21.9414081285174 35 19.804910383550606 25.89272020691717 31.609196896242477 22.69317251328975 36 20.541857835428065 27.61967272774536 30.74084664474454 21.09762279208204 37 19.4988237434851 27.58120069145687 31.632332107253795 21.287643457804233 38 20.390439179089928 27.13305345793421 30.730968689481276 21.745538673494586 39 20.70549396274971 25.80160906692315 30.832737623311974 22.660159347015167 40 22.334576742614278 25.272748541052003 31.752167301368615 20.640507414965104 41 19.69287357516994 26.703752323269082 31.361988068469827 22.24138603309115 42 20.532759718738223 26.457323334069848 31.939718478274997 21.070198468916935 43 20.900713552294675 25.640052509130612 31.50924758574975 21.949986352824965 44 21.40162986261844 24.913502904898685 30.51079426558702 23.174072966895853 45 20.10085912216171 24.394130415004096 30.231092163922067 25.273918298912122 46 21.673663551644808 24.684750256696862 30.20106837884558 23.440517812812747 47 19.64465355671376 24.197741067599008 33.17706234809394 22.98054302759329 48 19.555881932439988 24.67383251666905 32.03771819233418 23.73256735855678 49 20.30205747410286 23.34264807184913 33.12039407842576 23.234900375622246 50 19.01181455438724 23.351486242347836 34.039953729577974 23.596745473686948 51 18.901597369344543 23.183690975967973 32.51354969521309 25.40116195947439 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 389.0 1 587.5 2 786.0 3 12374.5 4 23963.0 5 15874.5 6 7786.0 7 7523.0 8 7260.0 9 7308.0 10 7356.0 11 7164.5 12 6973.0 13 6683.5 14 6394.0 15 5979.5 16 5565.0 17 5206.0 18 4847.0 19 4623.0 20 4399.0 21 4175.5 22 3952.0 23 4293.5 24 4635.0 25 5039.5 26 6222.5 27 7001.0 28 8475.0 29 9949.0 30 11046.0 31 12143.0 32 13753.5 33 15364.0 34 17559.5 35 19755.0 36 21751.0 37 23747.0 38 25730.0 39 27713.0 40 29613.5 41 31514.0 42 34331.5 43 37149.0 44 41023.0 45 44897.0 46 64134.0 47 83371.0 48 78451.0 49 73531.0 50 70711.5 51 67892.0 52 59186.0 53 50480.0 54 44565.5 55 38651.0 56 36334.0 57 34017.0 58 31590.5 59 29164.0 60 25906.5 61 22649.0 62 20074.0 63 17499.0 64 15001.0 65 12503.0 66 10134.0 67 7765.0 68 6373.5 69 4982.0 70 4132.0 71 3282.0 72 2578.0 73 1874.0 74 1639.0 75 1053.0 76 702.0 77 538.5 78 375.0 79 252.5 80 130.0 81 104.0 82 78.0 83 54.5 84 31.0 85 25.0 86 19.0 87 12.5 88 6.0 89 3.5 90 1.0 91 1.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 769390.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.67712533021941 #Duplication Level Percentage of deduplicated Percentage of total 1 71.9802487525891 28.559693510568472 2 8.837443892953658 7.012887378790087 3 4.254068809367933 5.063676639380063 4 2.7556524711250563 4.373454738534307 5 2.1586102010675514 4.282372374342367 6 1.7265421512368189 4.110253759351794 7 1.446992164763965 4.0188742631229735 8 1.1679626267064136 3.707311961667411 9 0.986990823650471 3.5244862748780594 >10 4.626295555671562 26.134519440860878 >50 0.03650209046265053 0.9601822115266972 >100 0.015784668107664736 1.1681618023441922 >500 0.0026307780179381625 0.8076534744221483 >1k 0.0036173197746649736 3.3600472170144045 >5k 3.288472522422703E-4 1.0328570118781464 >10k+ 3.288472522422703E-4 1.8835679413179536 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14436 1.8762916076372191 No Hit GAATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC 7916 1.028867024525923 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTT 3498 0.4546458883011217 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCG 3442 0.44736739494924554 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGC 3224 0.4190332601151561 No Hit CGTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTC 2594 0.3371502099065493 No Hit GAACTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCT 2310 0.3002378507648917 No Hit GAATGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTT 2206 0.2867206488256931 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCT 1966 0.25552710588908095 No Hit CGTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCT 1826 0.23733087250939056 No Hit CGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG 1819 0.23642106084040604 No Hit GCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC 1790 0.23265184106889872 No Hit CCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC 1077 0.1399810239280469 No Hit CTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGCT 905 0.11762565149014154 Illumina Single End Adapter 2 (95% over 21bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 901 0.11710575910786467 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCT 868 0.1128166469540805 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTC 858 0.11151691599838834 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTC 826 0.10735777694017337 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.899192867076515E-4 0.0 0.0 0.12698371437112518 0.0 2 3.899192867076515E-4 0.0 0.0 0.5891680422152614 0.0 3 3.899192867076515E-4 0.0 0.0 1.0421242802739832 0.0 4 3.899192867076515E-4 0.0 0.0 1.8699229259543275 0.0 5 3.899192867076515E-4 0.0 0.0 4.0055108592521345 0.0 6 3.899192867076515E-4 0.0 0.0 5.924433642236057 0.0 7 3.899192867076515E-4 0.0 0.0 7.271604777810993 0.0 8 3.899192867076515E-4 0.0 0.0 8.849998050403567 0.0 9 3.899192867076515E-4 0.0 0.0 9.782684984208268 0.0 10 5.198923822768687E-4 0.0 0.0 11.339632696031922 0.0 11 5.198923822768687E-4 0.0 0.0 12.31625053613902 0.0 12 5.198923822768687E-4 0.0 0.0 13.501085275348004 0.0 13 6.498654778460858E-4 0.0 0.0 13.996932634944567 0.0 14 6.498654778460858E-4 0.0 0.0 14.348899777746007 0.0 15 6.498654778460858E-4 0.0 0.0 14.661225126398836 0.0 16 0.0027294350069535607 0.0 0.0 15.004094152510431 0.0 17 0.0027294350069535607 0.0 0.0 15.398562497563004 0.0 18 0.0027294350069535607 0.0 0.0 15.855547901584371 0.0 19 0.0027294350069535607 0.0 0.0 16.19620738507129 0.0 20 0.0027294350069535607 0.0 0.0 16.528808536632916 0.0 21 0.0027294350069535607 0.0 0.0 16.87557675561159 0.0 22 0.002859408102522778 0.0 0.0 17.267835558039486 0.0 23 0.002859408102522778 0.0 0.0 17.624221786090278 0.0 24 0.002859408102522778 0.0 0.0 17.91978060541468 0.0 25 0.002859408102522778 0.0 0.0 18.222357971899818 0.0 26 0.002859408102522778 0.0 0.0 18.540272163662124 0.0 27 0.002859408102522778 0.0 0.0 18.85597681279975 0.0 28 0.002859408102522778 0.0 0.0 19.14334732710329 0.0 29 0.002859408102522778 0.0 0.0 19.458272137667503 0.0 30 0.002859408102522778 0.0 0.0 19.88003483278961 0.0 31 0.002989381198091995 0.0 0.0 20.20587738338164 0.0 32 0.002989381198091995 0.0 0.0 20.550696005926774 0.0 33 0.003119354293661212 0.0 0.0 20.902143256345937 0.0 34 0.003119354293661212 0.0 0.0 21.27035703609353 0.0 35 0.003119354293661212 0.0 0.0 21.64221006251706 0.0 36 0.003119354293661212 0.0 0.0 21.984689169341948 0.0 37 0.003119354293661212 0.0 0.0 22.330157657364925 0.0 38 0.003119354293661212 0.0 0.0 22.738273177452268 0.0 39 0.0032493273892304293 0.0 0.0 23.319382887742236 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATAG 25 3.8895985E-5 45.0 1 TATTCGA 20 7.031832E-4 45.0 18 CGTTTTT 7995 0.0 43.930584 1 TTAGGCG 55 6.002665E-11 40.909092 1 CCATACG 55 6.002665E-11 40.909092 2 TGCGTAG 45 1.9268555E-8 40.0 1 CGTTCTG 340 0.0 39.705883 1 CGTATGG 115 0.0 39.130432 2 TGCTACG 35 6.2455947E-6 38.57143 1 CGTTTTC 315 0.0 38.57143 1 GTTTTTT 9110 0.0 38.47969 2 CGTAAGG 100 0.0 38.25 2 CGTTAGG 65 9.094947E-12 38.07692 2 GCGTAAG 65 9.094947E-12 38.07692 1 CGGTCTA 60 1.546141E-10 37.499996 31 CCGAACC 60 1.546141E-10 37.499996 18 CGTTTCT 405 0.0 37.22222 1 AGGGCGA 490 0.0 37.19388 6 TAGCGCG 50 4.8754373E-8 36.0 1 GCGTTAG 50 4.8754373E-8 36.0 1 >>END_MODULE