SRR2935403.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935403.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	471745
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1742	0.3692672948308938	No Hit
GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	1069	0.22660547541574366	No Hit
GAATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC	850	0.18018208990026394	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGC	750	0.15898419697082108	No Hit
CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	744	0.15771232339505453	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCG	743	0.1575003444657601	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	707	0.1498691030111607	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	518	0.10980508537451376	No Hit
TCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	509	0.10789727501086391	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAAAGCG	20	7.029051E-4	45.000004	1
GCGAAAG	30	2.1627693E-6	45.000004	1
AAGCGCT	20	7.029051E-4	45.000004	42
ACGGGTC	40	6.8012014E-9	45.000004	5
GTCGTCC	20	7.029051E-4	45.000004	37
GCGATAC	20	7.029051E-4	45.000004	9
TTACGAG	20	7.029051E-4	45.000004	1
GCGTAAG	20	7.029051E-4	45.000004	1
AAGTCGC	20	7.029051E-4	45.000004	13
GCTAACG	25	3.8872968E-5	45.0	1
CTACGAA	50	1.0786607E-9	40.5	11
CGTTTTT	1025	0.0	40.17073	1
ATAGCGG	45	1.924127E-8	40.0	2
TTGCGAG	45	1.924127E-8	40.0	1
CACAACG	85	0.0	39.705883	12
CGTATGG	40	3.452442E-7	39.375004	2
ATTACGG	40	3.452442E-7	39.375004	2
TACCGGG	80	0.0	39.375004	3
CTCACGG	35	6.240458E-6	38.57143	2
CGAAAGG	70	0.0	38.57143	2