##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935403.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 471745 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.837204421880465 33.0 31.0 34.0 30.0 34.0 2 31.88253823569937 33.0 31.0 34.0 30.0 34.0 3 31.978746992548942 33.0 31.0 34.0 30.0 34.0 4 35.71798535225599 37.0 35.0 37.0 33.0 37.0 5 35.74035760845372 37.0 35.0 37.0 35.0 37.0 6 35.69365653054086 37.0 35.0 37.0 33.0 37.0 7 35.978193727543484 37.0 35.0 37.0 35.0 37.0 8 35.81049083721078 37.0 35.0 37.0 35.0 37.0 9 37.62574060138422 39.0 37.0 39.0 35.0 39.0 10 36.93963052072624 39.0 37.0 39.0 32.0 39.0 11 36.89825435351726 39.0 37.0 39.0 33.0 39.0 12 36.96141559528983 39.0 37.0 39.0 33.0 39.0 13 36.929095167940304 39.0 37.0 39.0 33.0 39.0 14 37.93560716064823 40.0 37.0 41.0 33.0 41.0 15 38.08314237564786 40.0 37.0 41.0 33.0 41.0 16 38.007122492024294 40.0 37.0 41.0 33.0 41.0 17 38.03425579497398 40.0 37.0 41.0 33.0 41.0 18 37.97952283543016 40.0 37.0 41.0 33.0 41.0 19 37.88481064982141 40.0 37.0 41.0 33.0 41.0 20 37.96125449130356 40.0 36.0 41.0 34.0 41.0 21 37.89129720505782 40.0 36.0 41.0 33.0 41.0 22 37.999815578331514 40.0 37.0 41.0 34.0 41.0 23 37.99577314014987 40.0 36.0 41.0 34.0 41.0 24 37.9950714898939 40.0 36.0 41.0 34.0 41.0 25 37.72839563747363 39.0 36.0 41.0 33.0 41.0 26 37.823578416305416 40.0 36.0 41.0 33.0 41.0 27 37.83768773383925 40.0 36.0 41.0 33.0 41.0 28 37.75421043148311 40.0 36.0 41.0 33.0 41.0 29 37.755719721459684 40.0 36.0 41.0 33.0 41.0 30 37.63271894773659 40.0 36.0 41.0 33.0 41.0 31 37.60177426363819 40.0 36.0 41.0 33.0 41.0 32 37.57951647606228 40.0 36.0 41.0 33.0 41.0 33 37.488058167018195 40.0 36.0 41.0 33.0 41.0 34 37.437823400354006 40.0 36.0 41.0 33.0 41.0 35 37.378176769229135 40.0 36.0 41.0 33.0 41.0 36 37.29168088691984 40.0 36.0 41.0 33.0 41.0 37 37.2541394185418 40.0 36.0 41.0 32.0 41.0 38 37.16849145194968 40.0 35.0 41.0 32.0 41.0 39 37.129813776510616 40.0 35.0 41.0 32.0 41.0 40 37.03099131946284 40.0 35.0 41.0 32.0 41.0 41 36.91247601988363 39.0 35.0 41.0 31.0 41.0 42 36.93970047377291 39.0 35.0 41.0 32.0 41.0 43 36.87114860782838 39.0 35.0 41.0 31.0 41.0 44 36.7374195804937 39.0 35.0 41.0 31.0 41.0 45 36.7130822796214 39.0 35.0 41.0 31.0 41.0 46 36.60705253897763 39.0 35.0 41.0 31.0 41.0 47 36.55227506385865 39.0 35.0 41.0 31.0 41.0 48 36.48612067960445 39.0 35.0 41.0 31.0 41.0 49 36.41423014552353 39.0 35.0 41.0 31.0 41.0 50 36.284446046063024 39.0 35.0 41.0 31.0 41.0 51 35.08673329871011 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 5.0 10 1.0 11 3.0 12 7.0 13 4.0 14 5.0 15 22.0 16 26.0 17 44.0 18 116.0 19 201.0 20 348.0 21 533.0 22 828.0 23 1214.0 24 1815.0 25 2638.0 26 3694.0 27 4422.0 28 4902.0 29 5598.0 30 6990.0 31 8797.0 32 11613.0 33 16423.0 34 28765.0 35 34805.0 36 36226.0 37 53984.0 38 100791.0 39 146872.0 40 50.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.388981335255274 22.028426374418384 26.50414948754094 11.078442802785403 2 31.40277056460588 25.765614897879153 25.878811646122372 16.952802891392597 3 31.076323013492456 24.77736912950853 27.959808795005774 16.18649906199324 4 27.908085936257937 26.454334439156746 27.523980116376435 18.113599508208882 5 24.825064388599774 30.216536476274257 26.17643006285175 18.781969072274215 6 25.27149201369384 35.01595141442941 25.12565051033927 14.586906061537483 7 79.87790013672641 6.2525304984684515 9.294852091702085 4.574717273103054 8 81.2288418531198 5.72682275381827 8.37168385462485 4.67265153843708 9 75.08124092465209 7.991393655470647 10.559942341731233 6.367423078146032 10 38.529714146413845 30.381456083265324 17.498648634325747 13.590181135995083 11 28.297915187230387 26.59932802679414 27.1294873289595 17.973269457015974 12 26.95608856479666 23.044865340385165 30.507795525124802 19.49125056969337 13 24.55457927482008 25.58310103975665 31.050461584118537 18.81185810130473 14 20.502814020286383 28.661035093111746 30.023847629545624 20.81230325705625 15 19.209318593731783 27.319632428536604 35.037361286288146 18.43368769144347 16 22.475701915229624 26.959904185523957 31.181464562422494 19.38292933682392 17 22.862775440121254 26.585973354248587 28.760029253092245 21.791221952537917 18 23.865647754613192 25.98861673149689 30.24070207421382 19.905033439676096 19 23.639042279197447 28.43336972304953 28.226478288058164 19.701109709694855 20 24.26671188883825 27.82011468060075 28.683504859616953 19.229668570944046 21 23.715566672672736 28.746674580546696 28.86135518129498 18.676403565485593 22 22.303998982501138 26.50520938218741 28.737983444445618 22.452808190865827 23 20.83774072857158 28.344974509533756 29.00592481107378 21.81135995082089 24 21.163340363967823 26.696838334269575 30.428939363427276 21.71088193833533 25 20.99608898875452 29.151554335499053 27.752069444297238 22.100287231449194 26 20.75061738863157 28.30936204941229 28.814931795779497 22.125088766176642 27 21.13705497673531 28.14571431599699 29.084568993842012 21.632661713425687 28 19.863697548463684 28.79860941822383 29.43814984790512 21.89954318540737 29 22.26626673308673 26.72015601649196 28.74540270697093 22.26817454345038 30 22.619423629291248 27.332563143223567 27.930979660621734 22.117033566863455 31 22.95201856935421 28.35239377205906 26.70764925966359 21.987938398923145 32 24.58701205100213 28.591717983232467 25.837687733839253 20.983582231926146 33 22.632142365048914 27.76182047504478 26.663345663441053 22.94269149646525 34 21.577123233950545 27.90829791518723 28.58896225715164 21.925616593710583 35 21.29964281550414 27.56022851328578 27.974647320056384 23.165481351153698 36 21.61803516730437 29.282345334873717 27.183329977000287 21.91628952082163 37 21.062014435765086 29.76862499867513 28.54381074521193 20.625549820347857 38 20.922320321360058 29.83497440354429 27.01947026465569 22.22323501043996 39 21.787618310739912 27.045967630817497 28.875769748487002 22.29064430995559 40 22.323077086137637 26.42698915727777 29.616424127441732 21.633509629142864 41 20.019926019353676 27.237808561828952 29.16427307125672 23.577992347560652 42 21.483428547202408 27.366055814052082 29.177415764872972 21.97309987387254 43 21.702614760092846 26.277120054266607 29.072274215942933 22.947990969697614 44 21.20170855017011 27.476284857285187 28.09081177330973 23.231194819234968 45 21.37298752504001 26.576646281359633 27.630605517811528 24.419760675788826 46 22.04538468876194 27.419262525304983 27.569555586174733 22.965797199758345 47 20.150928997657633 26.39582825467149 30.58177617144856 22.871466576222325 48 20.64378000826718 26.42995686228789 29.694856331280672 23.23140679816426 49 21.50462644013185 25.14176090896565 30.140012082798968 23.21360056810353 50 20.443883877942532 25.70710871339389 30.011552851646545 23.837454557017033 51 19.694326383957435 25.64309107674697 28.35726928743283 26.305313251862767 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 169.0 1 330.5 2 492.0 3 1734.5 4 2977.0 5 2010.5 6 1044.0 7 1057.0 8 1070.0 9 1143.5 10 1217.0 11 1326.0 12 1435.0 13 1435.5 14 1436.0 15 1464.0 16 1492.0 17 1437.5 18 1383.0 19 1359.0 20 1335.0 21 1589.0 22 1843.0 23 2192.5 24 2542.0 25 2957.5 26 3943.0 27 4513.0 28 5449.5 29 6386.0 30 7704.5 31 9023.0 32 10543.5 33 12064.0 34 13844.0 35 15624.0 36 16659.5 37 17695.0 38 19245.5 39 20796.0 40 22314.0 41 23832.0 42 26871.5 43 29911.0 44 31861.5 45 33812.0 46 39045.0 47 44278.0 48 46151.5 49 48025.0 50 46565.5 51 45106.0 52 39158.5 53 33211.0 54 29073.0 55 24935.0 56 22525.5 57 20116.0 58 18822.0 59 17528.0 60 15649.5 61 13771.0 62 12233.5 63 10696.0 64 8977.5 65 7259.0 66 5775.5 67 4292.0 68 3502.5 69 2713.0 70 2249.0 71 1785.0 72 1460.5 73 1136.0 74 840.5 75 491.5 76 438.0 77 327.5 78 217.0 79 154.5 80 92.0 81 93.0 82 94.0 83 55.5 84 17.0 85 15.0 86 13.0 87 9.0 88 5.0 89 3.5 90 2.0 91 2.0 92 2.0 93 2.0 94 2.0 95 2.5 96 3.0 97 1.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 471745.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 36.72595797159395 #Duplication Level Percentage of deduplicated Percentage of total 1 74.02185210366707 27.1852342933882 2 9.203283778903 6.759988265292878 3 3.407233172401556 3.7540170686712075 4 1.9984854790766975 2.935851748456463 5 1.3894569574979099 2.5514568912203517 6 1.086014329046434 2.393094996306488 7 0.8919983672611508 2.2931646182734413 8 0.7633738794146175 2.2428509609595095 9 0.6753956902175301 2.232409835981222 >10 6.484812204716002 43.71777762624164 >50 0.0584259097599746 1.4508227446041575 >100 0.014461858851478855 0.8619106567373063 >500 0.0040493204784140795 1.0242226463225421 >1k 0.0011569487081183084 0.597197647544631 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1742 0.3692672948308938 No Hit GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC 1069 0.22660547541574366 No Hit GAATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTC 850 0.18018208990026394 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGC 750 0.15898419697082108 No Hit CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC 744 0.15771232339505453 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCG 743 0.1575003444657601 No Hit CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT 707 0.1498691030111607 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 518 0.10980508537451376 No Hit TCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC 509 0.10789727501086391 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.479157171777125E-4 0.0 0.0 0.16385971234459296 0.0 2 8.479157171777125E-4 0.0 0.0 0.7694835133387741 0.0 3 8.479157171777125E-4 0.0 0.0 1.1283638406342409 0.0 4 8.479157171777125E-4 0.0 0.0 1.5569852356675746 0.0 5 8.479157171777125E-4 0.0 0.0 2.7243531992919903 0.0 6 8.479157171777125E-4 0.0 0.0 3.59558659869209 0.0 7 0.0010598946464721406 0.0 0.0 4.393263309627023 0.0 8 0.0010598946464721406 0.0 0.0 5.767522708242801 0.0 9 0.0010598946464721406 0.0 0.0 6.3538564266711886 0.0 10 0.0010598946464721406 0.0 0.0 7.583546195508166 0.0 11 0.0010598946464721406 0.0 0.0 8.882765053153717 0.0 12 0.0010598946464721406 0.0 0.0 10.036566365303289 0.0 13 0.0012718735757665687 0.0 0.0 10.497832515447964 0.0 14 0.0014838525050609968 0.0 0.0 10.703240097934266 0.0 15 0.0014838525050609968 0.0 0.0 10.998102788582814 0.0 16 0.0014838525050609968 0.0 0.0 11.55751518299081 0.0 17 0.0014838525050609968 0.0 0.0 12.285662805117171 0.0 18 0.0014838525050609968 0.0 0.0 13.09224263108247 0.0 19 0.0014838525050609968 0.0 0.0 13.59632852494462 0.0 20 0.0014838525050609968 0.0 0.0 14.076672778725795 0.0 21 0.0014838525050609968 0.0 0.0 14.644352351376273 0.0 22 0.0014838525050609968 0.0 0.0 15.25357979416846 0.0 23 0.0014838525050609968 0.0 0.0 15.855387974435342 0.0 24 0.0014838525050609968 0.0 0.0 16.330856712842742 0.0 25 0.0014838525050609968 0.0 0.0 16.770924970057976 0.0 26 0.0014838525050609968 0.0 0.0 17.18555575575788 0.0 27 0.0014838525050609968 0.0 0.0 17.6069698671952 0.0 28 0.0014838525050609968 0.0 0.0 18.021600652895103 0.0 29 0.0014838525050609968 0.0 0.0 18.479899098029655 0.0 30 0.0014838525050609968 0.0 0.0 19.02044536773045 0.0 31 0.0014838525050609968 0.0 0.0 19.480439644299356 0.0 32 0.001695831434355425 0.0 0.0 19.94255371016121 0.0 33 0.001695831434355425 0.0 0.0 20.384105819881505 0.0 34 0.001695831434355425 0.0 0.0 20.841768328228174 0.0 35 0.001695831434355425 0.0 0.0 21.3125735301911 0.0 36 0.001695831434355425 0.0 0.0 21.741830862012318 0.0 37 0.001695831434355425 0.0 0.0 22.200977222864047 0.0 38 0.001695831434355425 0.0 0.0 22.646132974382347 0.0 39 0.001695831434355425 0.0 0.0 23.22271566206319 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TAAAGCG 20 7.029051E-4 45.000004 1 GCGAAAG 30 2.1627693E-6 45.000004 1 AAGCGCT 20 7.029051E-4 45.000004 42 ACGGGTC 40 6.8012014E-9 45.000004 5 GTCGTCC 20 7.029051E-4 45.000004 37 GCGATAC 20 7.029051E-4 45.000004 9 TTACGAG 20 7.029051E-4 45.000004 1 GCGTAAG 20 7.029051E-4 45.000004 1 AAGTCGC 20 7.029051E-4 45.000004 13 GCTAACG 25 3.8872968E-5 45.0 1 CTACGAA 50 1.0786607E-9 40.5 11 CGTTTTT 1025 0.0 40.17073 1 ATAGCGG 45 1.924127E-8 40.0 2 TTGCGAG 45 1.924127E-8 40.0 1 CACAACG 85 0.0 39.705883 12 CGTATGG 40 3.452442E-7 39.375004 2 ATTACGG 40 3.452442E-7 39.375004 2 TACCGGG 80 0.0 39.375004 3 CTCACGG 35 6.240458E-6 38.57143 2 CGAAAGG 70 0.0 38.57143 2 >>END_MODULE