SRR2935400.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935400.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	290936
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC	1877	0.6451590727857673	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGC	1736	0.59669480573047	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCG	1688	0.5801963318393049	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1557	0.5351692468446668	No Hit
GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	981	0.33718756015068607	No Hit
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	717	0.24644595374927822	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTT	709	0.24369620810075066	No Hit
CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT	567	0.19488822283938737	Illumina Single End Adapter 1 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG	518	0.17804603074215636	No Hit
GAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT	396	0.13611240960211182	No Hit
TCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	340	0.11686419006241922	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCT	338	0.11617675365028736	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTC	301	0.10345918002584761	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACCGG	30	2.1598935E-6	45.000004	2
AGCGTCG	20	7.0245925E-4	45.0	17
TTGGACG	20	7.0245925E-4	45.0	1
CATGCGG	40	6.7848305E-9	45.0	2
CCGATAC	20	7.0245925E-4	45.0	11
TTGCTAG	25	3.8835995E-5	45.0	1
TACGGGT	35	1.2077544E-7	45.0	4
CGCGAGG	20	7.0245925E-4	45.0	2
TCGATCA	20	7.0245925E-4	45.0	17
CCTCGAT	20	7.0245925E-4	45.0	15
CCCACGA	20	7.0245925E-4	45.0	39
GTTACGG	25	3.8835995E-5	45.0	2
TGCGCGC	20	7.0245925E-4	45.0	11
TACGATG	20	7.0245925E-4	45.0	1
TGATTAG	25	3.8835995E-5	45.0	1
GATGCGC	20	7.0245925E-4	45.0	9
CTCGATC	20	7.0245925E-4	45.0	16
ATGCGAG	25	3.8835995E-5	45.0	1
ACGTACC	20	7.0245925E-4	45.0	35
CCAACGG	20	7.0245925E-4	45.0	2