##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2935400.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 290936 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.983659636483626 33.0 31.0 34.0 30.0 34.0 2 32.02986567492507 33.0 31.0 34.0 30.0 34.0 3 32.09952360656639 33.0 31.0 34.0 30.0 34.0 4 35.81047378117524 37.0 35.0 37.0 35.0 37.0 5 35.836053290070666 37.0 35.0 37.0 35.0 37.0 6 35.80703316193252 37.0 35.0 37.0 35.0 37.0 7 36.04038345203069 37.0 35.0 37.0 35.0 37.0 8 35.91175378777463 37.0 35.0 37.0 35.0 37.0 9 37.76161767536503 39.0 38.0 39.0 35.0 39.0 10 37.15602400527951 39.0 37.0 39.0 33.0 39.0 11 37.11024761459565 39.0 37.0 39.0 34.0 39.0 12 37.1361227211483 39.0 37.0 39.0 34.0 39.0 13 37.066540407512306 39.0 37.0 39.0 33.0 39.0 14 38.09111282206396 40.0 37.0 41.0 33.0 41.0 15 38.22077364093821 40.0 37.0 41.0 33.0 41.0 16 38.19428327879671 40.0 37.0 41.0 34.0 41.0 17 38.201597602221796 40.0 37.0 41.0 34.0 41.0 18 38.12007795528913 40.0 37.0 41.0 34.0 41.0 19 38.00495985371353 40.0 37.0 41.0 34.0 41.0 20 37.98905601231886 40.0 36.0 41.0 34.0 41.0 21 37.96154824428741 40.0 36.0 41.0 34.0 41.0 22 38.0724557978387 40.0 37.0 41.0 34.0 41.0 23 38.084042538565186 40.0 37.0 41.0 34.0 41.0 24 38.08355789589463 40.0 36.0 41.0 34.0 41.0 25 37.82563175406275 39.0 36.0 41.0 34.0 41.0 26 37.92479101933071 40.0 36.0 41.0 34.0 41.0 27 37.91834974014903 40.0 36.0 41.0 34.0 41.0 28 37.76188921274782 40.0 36.0 41.0 34.0 41.0 29 37.685339731074876 40.0 36.0 41.0 33.0 41.0 30 37.55780996507823 40.0 36.0 41.0 33.0 41.0 31 37.564357796903785 40.0 36.0 41.0 33.0 41.0 32 37.51577666565843 40.0 36.0 41.0 33.0 41.0 33 37.34821060301922 40.0 36.0 41.0 33.0 41.0 34 37.25206230923639 40.0 36.0 41.0 33.0 41.0 35 37.15561154343223 40.0 36.0 41.0 32.0 41.0 36 37.031962355982074 40.0 35.0 41.0 32.0 41.0 37 36.96951219512195 40.0 35.0 41.0 32.0 41.0 38 36.851826518547036 40.0 35.0 41.0 31.0 41.0 39 36.75782302637006 39.0 35.0 41.0 31.0 41.0 40 36.653655786839714 39.0 35.0 41.0 31.0 41.0 41 36.49246913410509 39.0 35.0 41.0 30.0 41.0 42 36.52568949872137 39.0 35.0 41.0 31.0 41.0 43 36.44209723100613 39.0 35.0 41.0 30.0 41.0 44 36.34989482222895 39.0 35.0 41.0 30.0 41.0 45 36.33105906453653 39.0 35.0 41.0 30.0 41.0 46 36.196342150851045 39.0 35.0 41.0 30.0 41.0 47 36.14400417961338 39.0 35.0 41.0 30.0 41.0 48 36.05387439161878 39.0 35.0 41.0 29.0 41.0 49 35.905456870239504 39.0 35.0 40.0 29.0 41.0 50 35.73710025572635 39.0 35.0 40.0 28.0 41.0 51 34.43372425550636 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 2.0 10 2.0 11 3.0 12 1.0 13 6.0 14 5.0 15 7.0 16 18.0 17 29.0 18 73.0 19 135.0 20 225.0 21 421.0 22 717.0 23 1017.0 24 1432.0 25 2171.0 26 2946.0 27 3281.0 28 3262.0 29 3327.0 30 3967.0 31 4984.0 32 6366.0 33 9627.0 34 17036.0 35 21018.0 36 22078.0 37 34442.0 38 65152.0 39 87150.0 40 33.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.42975774740837 22.417645117826602 27.362375230291196 11.790221904473837 2 30.932576236698107 27.294662743696207 25.990939588088104 15.781821431517585 3 28.472241317678115 26.570448483515275 29.905202518767016 15.052107680039597 4 25.288723293095387 25.707028349877636 31.952044435889682 17.052203921137295 5 25.638628426870515 28.678128523111614 27.864547529353533 17.81869552066434 6 23.93275497016526 34.993606841367175 26.838548684246703 14.235089504220861 7 78.37978112024638 5.1516484725162925 12.077226606538895 4.3913438006984356 8 79.77527703687409 5.962136002419776 9.422003464679516 4.840583496026618 9 73.34327824676218 7.425688123848544 11.439973052492643 7.791060576896637 10 36.67748233288421 32.95948249786895 17.400046745676025 12.96298842357082 11 27.089119256468774 25.997126515797287 28.904638820909067 18.00911540682487 12 25.291473038743916 21.439079385156873 33.63385761817032 19.635589957928893 13 24.149984876398932 24.348653999505046 34.0830973134985 17.41826381059752 14 19.08804685566585 29.85880056094811 30.963854593450108 20.089297989935933 15 17.46810295047708 25.87441911623175 37.38726042841037 19.270217504880797 16 20.820042896032117 26.792146726427806 30.935669700552697 21.452140676987376 17 21.470014023702806 25.8981356724503 29.040063794099048 23.59178650974785 18 22.913630489179752 25.600475705997194 31.116465476943382 20.36942832787967 19 22.59637858498089 28.01234635796189 28.246418456292794 21.14485660076443 20 22.384304451838204 27.415651552231417 29.552891357549427 20.647152638380952 21 22.39392856160805 28.811147468859133 30.198737866747326 18.59618610278549 22 21.245909753347817 25.239915307834025 29.240451508235488 24.27372343058267 23 19.367146038991393 28.016814694640747 28.99744273654687 23.618596529820994 24 20.639247119641432 26.041466164379795 29.636071163417384 23.683215552561386 25 19.828072153325817 29.693815822036463 27.843237000577446 22.634875024060275 26 19.23275222041961 27.626350812549838 28.946916160255178 24.19398080677537 27 19.952498143921687 28.37084444688866 28.58601204388594 23.090645365303708 28 18.519880661038854 26.576635411224466 32.57761157092969 22.325872356806993 29 19.53934886023043 25.04399593037644 31.81730689911183 23.5993483102813 30 21.82507493056892 27.985880056094814 29.508895427172988 20.680149586163278 31 21.5518189567465 27.906137432287515 28.008221739489098 22.53382187147689 32 22.584348447768583 28.13814722138202 27.080870019523196 22.196634311326203 33 23.292407952264416 27.3462204746061 26.03184205460995 23.329529518519536 34 21.18885253114087 25.41314928369126 29.342879533643142 24.055118651524733 35 21.06614513157533 27.468240437759505 27.4541479913108 24.011466439354358 36 22.25437896994528 28.61557180960761 28.700470206505894 20.42957901394121 37 20.005430747655844 29.355940825473642 28.52757994885473 22.111048478015782 38 22.5276349437677 26.77186735226991 27.172986498748863 23.527511205213518 39 22.6871201913823 25.640690736106908 26.592446448703495 25.0797426238073 40 25.05602606758875 24.654219484697666 27.841174691341052 22.448579756372535 41 20.799419803668158 27.054747435862183 26.803145709021912 25.342687051447744 42 22.20179008441719 26.752275414524156 28.7468721643248 22.29906233673385 43 21.27787554651195 27.24344873099238 28.58635576209201 22.89231996040366 44 21.110141061951772 25.79330161960019 27.909230896142105 25.18732642230594 45 20.675337531278355 24.785519839414853 27.49848763989331 27.040654989413483 46 23.07586548244287 26.66119008991668 26.841298429895232 23.42164599774521 47 19.895097203508673 25.23579068936123 30.86383259548492 24.00527951164517 48 20.660213930211455 25.24129018065829 28.498707619545193 25.599788269585062 49 21.45454670442984 23.752646630186707 30.864176313690983 23.92863035169247 50 20.64027827425963 23.862980174333874 30.380908515962275 25.115833035444226 51 20.87400665438447 23.610691011081474 27.472365056232302 28.042937278301753 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 86.0 1 161.0 2 236.0 3 1295.0 4 2354.0 5 1635.0 6 916.0 7 922.5 8 929.0 9 980.5 10 1032.0 11 1081.0 12 1130.0 13 1154.0 14 1178.0 15 1151.0 16 1124.0 17 1103.0 18 1082.0 19 1101.0 20 1120.0 21 1137.0 22 1154.0 23 1190.5 24 1227.0 25 1392.5 26 1639.0 27 1720.0 28 2357.5 29 2995.0 30 3426.0 31 3857.0 32 4724.5 33 5592.0 34 6637.0 35 7682.0 36 8518.0 37 9354.0 38 10431.5 39 11509.0 40 12637.5 41 13766.0 42 15574.5 43 17383.0 44 19703.5 45 22024.0 46 29052.5 47 36081.0 48 35486.5 49 34892.0 50 32409.5 51 29927.0 52 24946.0 53 19965.0 54 17424.0 55 14883.0 56 13224.5 57 11566.0 58 10447.0 59 9328.0 60 8858.5 61 8389.0 62 6885.5 63 5382.0 64 4550.0 65 3718.0 66 2925.0 67 2132.0 68 1723.0 69 1314.0 70 1153.5 71 993.0 72 812.5 73 632.0 74 502.0 75 304.5 76 237.0 77 140.0 78 43.0 79 32.5 80 22.0 81 24.5 82 27.0 83 22.5 84 18.0 85 10.5 86 3.0 87 2.0 88 1.0 89 1.5 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 290936.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 47.205247579681235 #Duplication Level Percentage of deduplicated Percentage of total 1 76.82538962505897 36.26561537656383 2 8.871396497661367 8.375529360992436 3 3.7449120490900203 5.3033850132427744 4 2.258166590839274 4.263892519869307 5 1.476920675037566 3.485920306034912 6 1.1819369685569698 3.3476176334585808 7 0.9122322478728733 3.0143504377705685 8 0.7295481156177005 2.755079953521877 9 0.5981638548904269 2.5412825576987212 >10 3.3444380296965663 24.56408298019425 >50 0.03793023045219574 1.1652061597582493 >100 0.012400267647833224 1.3542422654637098 >500 0.0036471375434803596 1.2023935903888316 >1k 0.002917710034784288 2.361401845041984 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GAATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTC 1877 0.6451590727857673 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGC 1736 0.59669480573047 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCG 1688 0.5801963318393049 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1557 0.5351692468446668 No Hit GCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 981 0.33718756015068607 No Hit CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 717 0.24644595374927822 No Hit GAATGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTT 709 0.24369620810075066 No Hit CTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGCT 567 0.19488822283938737 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTG 518 0.17804603074215636 No Hit GAACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCT 396 0.13611240960211182 No Hit TCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC 340 0.11686419006241922 No Hit GAATGACTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCT 338 0.11617675365028736 No Hit GAATGATCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTC 301 0.10345918002584761 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.437182060659389E-4 0.0 0.0 0.2103555421123546 0.0 2 3.437182060659389E-4 0.0 0.0 1.0617455385376853 0.0 3 6.874364121318778E-4 0.0 0.0 1.5965710671762863 0.0 4 6.874364121318778E-4 0.0 0.0 2.276445678774713 0.0 5 6.874364121318778E-4 0.0 0.0 4.273448456017818 0.0 6 6.874364121318778E-4 0.0 0.0 5.618074078147771 0.0 7 6.874364121318778E-4 0.0 0.0 6.7671240410262055 0.0 8 6.874364121318778E-4 0.0 0.0 8.527648692495944 0.0 9 6.874364121318778E-4 0.0 0.0 9.278329254543955 0.0 10 6.874364121318778E-4 0.0 0.0 11.247147138889654 0.0 11 6.874364121318778E-4 0.0 0.0 12.960926114334423 0.0 12 6.874364121318778E-4 0.0 0.0 14.969959028789837 0.0 13 6.874364121318778E-4 0.0 0.0 15.725795363928837 0.0 14 6.874364121318778E-4 0.0 0.0 16.072950752055434 0.0 15 6.874364121318778E-4 0.0 0.0 16.52219044738362 0.0 16 6.874364121318778E-4 0.0 0.0 17.24159265267963 0.0 17 6.874364121318778E-4 0.0 0.0 18.20022272939753 0.0 18 6.874364121318778E-4 0.0 0.0 19.249250694310778 0.0 19 6.874364121318778E-4 0.0 0.0 19.95043583468529 0.0 20 6.874364121318778E-4 0.0 0.0 20.5760029697253 0.0 21 6.874364121318778E-4 0.0 0.0 21.32359006791872 0.0 22 6.874364121318778E-4 0.0 0.0 22.135452470646467 0.0 23 6.874364121318778E-4 0.0 0.0 22.89850688811285 0.0 24 6.874364121318778E-4 0.0 0.0 23.52132427750433 0.0 25 6.874364121318778E-4 0.0 0.0 24.06577391591278 0.0 26 6.874364121318778E-4 0.0 0.0 24.59544367146039 0.0 27 6.874364121318778E-4 0.0 0.0 25.185951549481672 0.0 28 6.874364121318778E-4 0.0 0.0 25.709778095526165 0.0 29 6.874364121318778E-4 0.0 0.0 26.284474936068413 0.0 30 6.874364121318778E-4 0.0 0.0 26.966411856903235 0.0 31 6.874364121318778E-4 0.0 0.0 27.569981026755027 0.0 32 6.874364121318778E-4 0.0 0.0 28.107556301042152 0.0 33 6.874364121318778E-4 0.0 0.0 28.69875161547557 0.0 34 6.874364121318778E-4 0.0 0.0 29.307820276624412 0.0 35 6.874364121318778E-4 0.0 0.0 29.927887920367365 0.0 36 6.874364121318778E-4 0.0 0.0 30.464432040036296 0.0 37 6.874364121318778E-4 0.0 0.0 31.013693733329667 0.0 38 6.874364121318778E-4 0.0 0.0 31.575329282041412 0.0 39 6.874364121318778E-4 0.0 0.0 32.255547611845905 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CAACCGG 30 2.1598935E-6 45.000004 2 AGCGTCG 20 7.0245925E-4 45.0 17 TTGGACG 20 7.0245925E-4 45.0 1 CATGCGG 40 6.7848305E-9 45.0 2 CCGATAC 20 7.0245925E-4 45.0 11 TTGCTAG 25 3.8835995E-5 45.0 1 TACGGGT 35 1.2077544E-7 45.0 4 CGCGAGG 20 7.0245925E-4 45.0 2 TCGATCA 20 7.0245925E-4 45.0 17 CCTCGAT 20 7.0245925E-4 45.0 15 CCCACGA 20 7.0245925E-4 45.0 39 GTTACGG 25 3.8835995E-5 45.0 2 TGCGCGC 20 7.0245925E-4 45.0 11 TACGATG 20 7.0245925E-4 45.0 1 TGATTAG 25 3.8835995E-5 45.0 1 GATGCGC 20 7.0245925E-4 45.0 9 CTCGATC 20 7.0245925E-4 45.0 16 ATGCGAG 25 3.8835995E-5 45.0 1 ACGTACC 20 7.0245925E-4 45.0 35 CCAACGG 20 7.0245925E-4 45.0 2 >>END_MODULE