SRR2935398.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935398.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	636421
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCG	9720	1.5272908970634218	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTC	9645	1.5155062450799077	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGC	9554	1.5012075340065774	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3535	0.5554499301562958	No Hit
GCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	2524	0.39659282141852636	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCT	2124	0.3337413441731181	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCT	1932	0.3035726350953221	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTT	1671	0.2625620461926932	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTC	1503	0.2361644257496217	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTCTGAATCGTA	1474	0.2316076936493296	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTCTGAAT	1455	0.2286222484801727	No Hit
CCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGC	1090	0.17127027549373763	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTG	917	0.14408701158509854	No Hit
CTGTCTCTTATACACATCTGACGCGGTCTGAATCGTATGCCGTCTTCTGCT	896	0.14078730902971462	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTGCG	30	2.163968E-6	45.000004	1
GGCCCGT	20	7.030911E-4	45.0	22
CGCTCTA	20	7.030911E-4	45.0	12
GTATGCG	20	7.030911E-4	45.0	1
GTATACG	20	7.030911E-4	45.0	1
TTGCTCG	25	3.888838E-5	44.999996	1
ATATGCG	25	3.888838E-5	44.999996	1
CGTTTTT	1755	0.0	41.666664	1
TACGGCT	1100	0.0	41.113636	7
CCGATGA	670	0.0	40.97015	18
TCGATCA	50	1.0804797E-9	40.499996	17
CTCGATC	50	1.0804797E-9	40.499996	16
AAATGCG	45	1.925946E-8	40.000004	1
CGATGAA	725	0.0	39.72414	19
TACGGGT	80	0.0	39.375	4
ACGGCTG	1165	0.0	38.62661	8
CGTAAGG	140	0.0	38.571426	2
GTTTGCG	65	9.094947E-12	38.076927	1
ACACGCG	65	9.094947E-12	38.076927	36
CGCATCG	30	1.1393494E-4	37.500004	21