SRR2935397.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935397.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	572742
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6450	1.1261615177514483	No Hit
GAATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	5192	0.9065163721186853	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGC	4694	0.819566227027178	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCG	4503	0.7862178782069413	No Hit
GCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	1786	0.3118332512719514	No Hit
GAACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT	1388	0.24234297467271476	No Hit
GAATGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTT	1160	0.20253447451033796	No Hit
CGCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTG	1041	0.18175723100453606	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGCT	959	0.16744013884087425	TruSeq Adapter, Index 15 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCTGC	865	0.15102786245813998	No Hit
GAATGACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCT	860	0.15015486903352643	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTT	808	0.14107573741754575	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTC	753	0.13147280974679698	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCATAGAGCCT	707	0.12344127024035256	No Hit
CGTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTCT	698	0.1218698820760482	No Hit
CGTTCTGTCTCTTATACACATCTGACGCATAGAGCCTCGTATGCCGTCTTC	591	0.10318782278931876	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCATAGAGCCTCGTA	588	0.10266402673455063	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATAT	35	1.210501E-7	45.000004	9
TCGCCGA	20	7.03032E-4	45.0	14
AACGTTC	20	7.03032E-4	45.0	27
GCGTTAG	25	3.8883467E-5	45.0	1
CCATAGG	25	3.8883467E-5	45.0	2
CATACGG	25	3.8883467E-5	45.0	2
TCGACGT	20	7.03032E-4	45.0	26
CGATTCA	30	2.1635879E-6	44.999996	10
CGTTTTT	3435	0.0	43.689957	1
TGCAACG	60	3.6379788E-12	41.249996	1
TCACGAC	50	1.0786607E-9	40.5	25
TCGTAGG	50	1.0786607E-9	40.5	2
TTGTGCG	45	1.9254003E-8	40.0	1
CGGTCTA	45	1.9254003E-8	40.0	31
ACGGTCT	45	1.9254003E-8	40.0	30
CGCATGG	40	3.45417E-7	39.375	2
TATCGCG	40	3.45417E-7	39.375	1
ACAACGA	35	6.242799E-6	38.57143	13
TATTGCG	35	6.242799E-6	38.57143	1
CTACGAA	35	6.242799E-6	38.57143	11