SRR2935396.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935396.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	86803
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	850	0.9792288284967109	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTC	503	0.5794730596868772	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCG	427	0.4919184820801124	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC	427	0.4919184820801124	No Hit
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	373	0.4297086506226743	No Hit
CCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	278	0.32026542861421836	No Hit
CTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGCT	266	0.3064410216236766	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCC	262	0.30183288596016267	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTT	156	0.1797172908770434	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	142	0.16358881605474465	No Hit
TCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	107	0.12326762899899774	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCT	101	0.11635542550372682	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC	93	0.10713915417669896	No Hit
GAACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCT	92	0.10598712026082047	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AAGGGCG	30	2.1423093E-6	45.000004	5
CGGGCGA	35	1.1946577E-7	45.000004	6
GCGGGCG	25	3.8609774E-5	45.0	5
AATCTAT	25	3.8609774E-5	45.0	16
GCCCAGG	20	6.9972646E-4	45.0	2
AGTAGGG	40	6.690243E-9	45.0	3
GCGATAT	20	6.9972646E-4	45.0	9
ATCTATA	25	3.8609774E-5	45.0	17
TCTGGGA	20	6.9972646E-4	45.0	4
TACGGGA	20	6.9972646E-4	45.0	4
AGCTACG	20	6.9972646E-4	45.0	9
GGATCTT	20	6.9972646E-4	45.0	8
GGCGATA	50	2.1827873E-11	45.0	8
TCTACGG	20	6.9972646E-4	45.0	2
CGAGGGT	20	6.9972646E-4	45.0	4
GCTACGA	20	6.9972646E-4	45.0	10
CGAATAT	20	6.9972646E-4	45.0	14
CGGGAAT	25	3.8609774E-5	45.0	6
ACGGGAC	20	6.9972646E-4	45.0	5
TACTGAC	20	6.9972646E-4	45.0	20