SRR2935388.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935388.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	317864
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5645	1.7759167442679888	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC	2215	0.6968388996551985	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTT	1068	0.33599275161704373	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC	1057	0.33253215211537007	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG	1012	0.3183751541539778	No Hit
CGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTG	837	0.2633201620818966	No Hit
GCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC	760	0.23909596557018095	No Hit
GAACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT	513	0.16138977675987215	No Hit
CCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC	503	0.15824377721289606	No Hit
CTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGCT	494	0.15541237762061763	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTT	369	0.11608738328341682	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT	365	0.11482898346462639	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCT	318	0.10004278559383886	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGTGCG	35	1.2082273E-7	45.000004	1
ACGCGAG	20	7.025578E-4	45.0	1
CGTTGCG	20	7.025578E-4	45.0	2
GTTAGCG	20	7.025578E-4	45.0	1
TCTAGCG	20	7.025578E-4	45.0	1
GTATGCG	20	7.025578E-4	45.0	1
ATTTGCG	20	7.025578E-4	45.0	1
TGCGTAG	20	7.025578E-4	45.0	1
GTACGAG	20	7.025578E-4	45.0	1
CGTTTTT	3520	0.0	43.977272	1
ACGGGAA	195	0.0	41.538464	5
AAGGGCG	55	6.002665E-11	40.909092	5
ATTGCGG	40	3.4477125E-7	39.375	2
GTTTTTT	3995	0.0	38.917397	2
CGCATGG	35	6.234035E-6	38.57143	2
ACGGGTC	35	6.234035E-6	38.57143	5
CGTTTCT	70	0.0	38.57143	1
CGATAGA	35	6.234035E-6	38.57143	10
AGACGGG	100	0.0	38.25	3
GACGTAG	30	1.13806454E-4	37.500004	1