SRR2935385.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935385.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	779796
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGC	4485	0.5751504239570349	No Hit
GAATCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTC	4355	0.5584793971756716	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCG	4240	0.5437319504075425	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2889	0.3704815105489128	No Hit
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	2249	0.28840876331758564	TruSeq Adapter, Index 27 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	1216	0.15593821973952163	TruSeq Adapter, Index 27 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT	1048	0.13439412359129824	TruSeq Adapter, Index 20 (95% over 22bp)
GAACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCT	920	0.1179795741450328	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTT	826	0.10592513939543162	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCT	794	0.10182150203386527	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	30	2.1645992E-6	45.000004	1
GCGAACC	20	7.031888E-4	45.000004	33
CGCATCG	35	1.2112469E-7	45.000004	21
CGTCTCG	25	3.889647E-5	45.000004	42
CGTACTC	20	7.031888E-4	45.000004	42
TAGTACG	20	7.031888E-4	45.000004	1
CGTTTTT	1575	0.0	41.42857	1
TACGGCT	545	0.0	40.871563	7
CGGTCTA	95	0.0	40.26316	31
TAGCACG	40	3.4563163E-7	39.375004	1
CATCGCC	40	3.4563163E-7	39.375004	23
ATAACGC	40	3.4563163E-7	39.375004	11
GCATCGC	40	3.4563163E-7	39.375004	22
CGAACGT	35	6.245704E-6	38.57143	15
TATGCGA	35	6.245704E-6	38.57143	11
GTATGCG	35	6.245704E-6	38.57143	1
ACGTAGG	70	0.0	38.57143	2
TATAACG	35	6.245704E-6	38.57143	1
CTAACGG	60	1.546141E-10	37.500004	2
CGTCACG	30	1.139585E-4	37.500004	37