SRR2935384.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935384.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	560627
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1842	0.32856070078679767	No Hit
CCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	922	0.16445872210935258	Illumina Single End Adapter 1 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGC	913	0.16285337666576888	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGC	748	0.133422043533401	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCG	736	0.13128158294195605	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	734	0.13092483951004857	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	585	0.10434745383294061	No Hit
CTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGCT	574	0.10238536495744943	Illumina Single End Adapter 1 (95% over 22bp)
GAGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	569	0.1014935063776807	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATAG	20	7.0301903E-4	45.000004	1
GTCGTTA	20	7.0301903E-4	45.000004	20
TTGTGCG	50	2.1827873E-11	45.0	1
TAACGCC	25	3.88824E-5	45.0	12
ACTACGG	35	1.2104465E-7	45.0	2
ATAACGC	25	3.88824E-5	45.0	11
ACGCGCA	25	3.88824E-5	45.0	17
ATTAGCG	30	2.1635042E-6	44.999996	1
CACGGGC	95	0.0	42.63158	4
TACGAAT	75	0.0	42.000004	12
CGAATAT	70	0.0	41.785713	14
CGGTCTA	55	6.002665E-11	40.909092	31
TACGGTT	105	0.0	40.714287	33
TAACGGG	145	0.0	40.344826	3
CTACGAA	80	0.0	39.375004	11
GCTACGA	80	0.0	39.375004	10
TATACGG	40	3.453988E-7	39.375004	2
CGTTTTT	1040	0.0	39.375	1
TTTGCGG	105	0.0	38.57143	2
ATGTACG	35	6.242566E-6	38.571426	1