SRR2935383.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935383.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	573971
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6156	1.0725280545532787	No Hit
GAATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	4356	0.7589233602394546	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCG	2167	0.37754520698780947	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGC	2143	0.37336381106362515	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTT	1979	0.3447909389150323	No Hit
CGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG	1377	0.2399075911500755	No Hit
GCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	1374	0.23938491665955247	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTT	1282	0.2233562322835126	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTC	1117	0.19460913530474536	No Hit
GAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT	1109	0.19321533666335058	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	890	0.15506009885516864	No Hit
CGTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT	742	0.12927482398936532	No Hit
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	697	0.12143470663151971	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	694	0.12091203214099668	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGCGT	20	7.0303306E-4	45.000004	29
ACGCCCA	20	7.0303306E-4	45.000004	30
CGCATCG	20	7.0303306E-4	45.000004	21
TAACGCC	20	7.0303306E-4	45.000004	12
TGCGACG	20	7.0303306E-4	45.000004	1
TCGTAAG	25	3.888356E-5	45.000004	1
ATAACGC	20	7.0303306E-4	45.000004	11
TAGGCGC	20	7.0303306E-4	45.000004	13
CGCGTAA	20	7.0303306E-4	45.000004	31
GCATCGC	20	7.0303306E-4	45.000004	22
CGTTTTT	3545	0.0	43.47673	1
GTGCGAG	60	3.6379788E-12	41.250004	1
TACGGGT	40	3.454188E-7	39.375004	4
GCGAGAC	75	0.0	39.0	21
CGAGACA	75	0.0	39.0	22
TTCGGGC	35	6.2428226E-6	38.57143	4
CGAACGG	65	9.094947E-12	38.07692	2
TTACACG	465	0.0	37.741936	34
TTGGACG	30	1.1392097E-4	37.500004	1
GTCGAAG	30	1.1392097E-4	37.500004	1