SRR2935375.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935375.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	626582
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC	10799	1.7234775336667827	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7967	1.2715015752128214	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGC	7607	1.214047004222911	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCG	7303	1.1655298109425423	No Hit
GAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	3305	0.5274648808934824	No Hit
GCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC	2745	0.4380911037980663	TruSeq Adapter, Index 20 (95% over 21bp)
GAATGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	1907	0.30434963021599726	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCT	1620	0.25854556945459656	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTC	1387	0.22135969434168234	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGACGATACT	1228	0.19598392548780527	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGACGATACTCGTA	1119	0.17858795816030462	No Hit
CGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG	1020	0.1627879511380793	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	896	0.14299804335266572	No Hit
CTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGCT	705	0.11251520152190775	TruSeq Adapter, Index 23 (95% over 22bp)
CGTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	693	0.11060004915557739	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTC	682	0.1088444928197746	No Hit
CCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC	670	0.10692934045344424	TruSeq Adapter, Index 20 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATTGCG	30	2.1639153E-6	45.000004	1
TCTAGCG	40	6.8066583E-9	45.0	1
AGTGCGC	20	7.0308277E-4	45.0	13
TGTAACG	20	7.0308277E-4	45.0	1
AATCGCG	20	7.0308277E-4	45.0	1
GCGTAGT	25	3.8887683E-5	44.999996	18
CGTTTTT	4945	0.0	44.180992	1
CGATGAA	535	0.0	42.056072	19
CTAGCGG	65	0.0	41.53846	2
ACGACAC	55	6.002665E-11	40.909092	37
CGACACT	50	1.0804797E-9	40.499996	38
TACGAAT	50	1.0804797E-9	40.499996	12
CCGATGA	540	0.0	40.416664	18
CGCGGGT	45	1.925946E-8	40.0	4
CAACGAC	45	1.925946E-8	40.0	12
GCGCAAT	45	1.925946E-8	40.0	19
TACGGCT	950	0.0	39.55263	7
GGCTACG	40	3.4548611E-7	39.375	1
ACGGCTG	955	0.0	39.34555	8
TTTAGCG	35	6.243741E-6	38.571426	1