SRR2935374.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935374.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	384625
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTC	3559	0.9253168670783231	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGC	3535	0.9190770230744232	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCG	3282	0.8532986675333117	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2047	0.5322066948326292	No Hit
GCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	1432	0.3723106922326942	No Hit
GAACTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCT	795	0.20669483262918428	No Hit
GAATGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTT	783	0.20357491062723432	No Hit
CCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGC	664	0.1726356841078973	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCT	658	0.17107572310692232	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	644	0.1674358141046474	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTACGGTAGT	595	0.15469613259668508	No Hit
CTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTGCT	579	0.15053623659408516	No Hit
CGCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTCTTCTG	533	0.13857653558661032	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTACGGTAGTCGTA	498	0.12947676308092299	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTACGGTAGTCGTATGCCGTC	488	0.126876828079298	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TATGCGG	40	6.7939254E-9	45.0	2
ATCGTAG	20	7.0274266E-4	45.0	1
GGCATCC	35	1.2091186E-7	45.0	8
TCCCCGC	35	1.2091186E-7	45.0	33
TCGACGG	20	7.0274266E-4	45.0	2
GCGTAAG	20	7.0274266E-4	45.0	1
GTCGGTC	35	1.2091186E-7	45.0	21
CGTTTTT	1025	0.0	42.365856	1
CGTAAGG	65	0.0	41.538464	2
CCGATGA	195	0.0	41.53846	18
CATACGA	120	0.0	41.249996	18
TCGTTGA	50	1.0768417E-9	40.5	24
TTAATCG	50	1.0768417E-9	40.5	20
TCGTACG	50	1.0768417E-9	40.5	30
CTCACGA	45	1.9224899E-8	40.0	24
GTACAAG	45	1.9224899E-8	40.0	1
CTCGCCA	45	1.9224899E-8	40.0	42
TACGGCT	410	0.0	39.512196	7
GTTAGCG	40	3.4502227E-7	39.375	1
CGGTCTA	40	3.4502227E-7	39.375	31