Basic Statistics
Measure | Value |
---|---|
Filename | SRR2935373.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 375743 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 45 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GAATCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTC | 2244 | 0.5972167146161074 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGC | 1751 | 0.46601001216256854 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCG | 1590 | 0.42316157586435404 | No Hit |
GCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC | 1369 | 0.3643447782127678 | TruSeq Adapter, Index 19 (95% over 22bp) |
GAATGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTT | 1037 | 0.2759865120574435 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 835 | 0.22222636216775826 | No Hit |
CCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC | 722 | 0.19215261495224129 | TruSeq Adapter, Index 19 (95% over 22bp) |
CTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGCT | 720 | 0.19162033624046224 | TruSeq Adapter, Index 13 (95% over 23bp) |
GAACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCT | 498 | 0.13253739923298638 | No Hit |
TCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC | 488 | 0.12987600567409108 | TruSeq Adapter, Index 19 (95% over 22bp) |
GAATGACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCT | 385 | 0.10246365201746939 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTTGCG | 20 | 7.0272177E-4 | 45.000004 | 1 |
CCGGCGC | 20 | 7.0272177E-4 | 45.000004 | 21 |
TGGCGTT | 20 | 7.0272177E-4 | 45.000004 | 26 |
AGGCGTC | 20 | 7.0272177E-4 | 45.000004 | 35 |
ACGATTG | 20 | 7.0272177E-4 | 45.000004 | 1 |
GAGACCG | 20 | 7.0272177E-4 | 45.000004 | 5 |
CGCTAGG | 20 | 7.0272177E-4 | 45.000004 | 2 |
CTCGCGG | 20 | 7.0272177E-4 | 45.000004 | 2 |
AGTTCGG | 20 | 7.0272177E-4 | 45.000004 | 2 |
TAGTCCG | 20 | 7.0272177E-4 | 45.000004 | 1 |
AGTGTCG | 20 | 7.0272177E-4 | 45.000004 | 2 |
TAACTCG | 20 | 7.0272177E-4 | 45.000004 | 31 |
TGCCGAG | 20 | 7.0272177E-4 | 45.000004 | 1 |
GTAAGCG | 25 | 3.885777E-5 | 45.0 | 1 |
ATGATCG | 30 | 2.161587E-6 | 44.999996 | 27 |
GTTGTCG | 30 | 2.161587E-6 | 44.999996 | 37 |
CGTTTTT | 605 | 0.0 | 42.39669 | 1 |
AGGGCCG | 65 | 0.0 | 41.53846 | 6 |
CACGGGT | 55 | 6.002665E-11 | 40.909092 | 4 |
GATATCG | 55 | 6.002665E-11 | 40.909092 | 1 |