FastQCFastQC Report
Sat 14 Jan 2017
SRR2935373.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2935373.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences375743
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTC22440.5972167146161074No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGC17510.46601001216256854No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCG15900.42316157586435404No Hit
GCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC13690.3643447782127678TruSeq Adapter, Index 19 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTT10370.2759865120574435No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8350.22222636216775826No Hit
CCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC7220.19215261495224129TruSeq Adapter, Index 19 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGCT7200.19162033624046224TruSeq Adapter, Index 13 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCT4980.13253739923298638No Hit
TCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC4880.12987600567409108TruSeq Adapter, Index 19 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCT3850.10246365201746939No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTTGCG207.0272177E-445.0000041
CCGGCGC207.0272177E-445.00000421
TGGCGTT207.0272177E-445.00000426
AGGCGTC207.0272177E-445.00000435
ACGATTG207.0272177E-445.0000041
GAGACCG207.0272177E-445.0000045
CGCTAGG207.0272177E-445.0000042
CTCGCGG207.0272177E-445.0000042
AGTTCGG207.0272177E-445.0000042
TAGTCCG207.0272177E-445.0000041
AGTGTCG207.0272177E-445.0000042
TAACTCG207.0272177E-445.00000431
TGCCGAG207.0272177E-445.0000041
GTAAGCG253.885777E-545.01
ATGATCG302.161587E-644.99999627
GTTGTCG302.161587E-644.99999637
CGTTTTT6050.042.396691
AGGGCCG650.041.538466
CACGGGT556.002665E-1140.9090924
GATATCG556.002665E-1140.9090921