SRR2935373.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935373.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	375743
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTC	2244	0.5972167146161074	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGC	1751	0.46601001216256854	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCG	1590	0.42316157586435404	No Hit
GCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC	1369	0.3643447782127678	TruSeq Adapter, Index 19 (95% over 22bp)
GAATGCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTT	1037	0.2759865120574435	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	835	0.22222636216775826	No Hit
CCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC	722	0.19215261495224129	TruSeq Adapter, Index 19 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGCT	720	0.19162033624046224	TruSeq Adapter, Index 13 (95% over 23bp)
GAACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCT	498	0.13253739923298638	No Hit
TCTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCTTCTGC	488	0.12987600567409108	TruSeq Adapter, Index 19 (95% over 22bp)
GAATGACTGTCTCTTATACACATCTGACGCTCTGACTGTCGTATGCCGTCT	385	0.10246365201746939	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	20	7.0272177E-4	45.000004	1
CCGGCGC	20	7.0272177E-4	45.000004	21
TGGCGTT	20	7.0272177E-4	45.000004	26
AGGCGTC	20	7.0272177E-4	45.000004	35
ACGATTG	20	7.0272177E-4	45.000004	1
GAGACCG	20	7.0272177E-4	45.000004	5
CGCTAGG	20	7.0272177E-4	45.000004	2
CTCGCGG	20	7.0272177E-4	45.000004	2
AGTTCGG	20	7.0272177E-4	45.000004	2
TAGTCCG	20	7.0272177E-4	45.000004	1
AGTGTCG	20	7.0272177E-4	45.000004	2
TAACTCG	20	7.0272177E-4	45.000004	31
TGCCGAG	20	7.0272177E-4	45.000004	1
GTAAGCG	25	3.885777E-5	45.0	1
ATGATCG	30	2.161587E-6	44.999996	27
GTTGTCG	30	2.161587E-6	44.999996	37
CGTTTTT	605	0.0	42.39669	1
AGGGCCG	65	0.0	41.53846	6
CACGGGT	55	6.002665E-11	40.909092	4
GATATCG	55	6.002665E-11	40.909092	1