SRR2935371.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2935371.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	463180
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14278	3.0826028757718382	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	3141	0.6781380888639406	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTT	1940	0.4188436460987089	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTG	1366	0.2949177425622868	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTC	1341	0.2895202728960663	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCG	1159	0.2502266937259813	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCT	1158	0.2500107949393324	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGC	975	0.21050131698259855	No Hit
GAACTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCT	908	0.19603609827712767	No Hit
CGTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCT	901	0.19452480677058595	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTT	781	0.16861695237272767	No Hit
GCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	711	0.15350403730731033	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCC	608	0.13126646228248198	No Hit
CCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	567	0.12241461202988038	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTC	551	0.11896023144349929	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGACG	20	7.02892E-4	45.0	1
CGACGGT	35	1.209828E-7	45.0	28
TAGACGG	35	1.209828E-7	45.0	2
GCGAACG	25	3.887186E-5	45.0	1
TCCGAAC	20	7.02892E-4	45.0	17
GCGTTAG	20	7.02892E-4	45.0	1
GCGGGTC	35	1.209828E-7	45.0	5
CGGTCTA	35	1.209828E-7	45.0	31
CCGAACC	20	7.02892E-4	45.0	18
CGCCCAA	20	7.02892E-4	45.0	37
GTACGGC	20	7.02892E-4	45.0	9
CGTTTTT	7560	0.0	44.434525	1
CAGACGT	100	0.0	42.75	23
TAGGGCG	110	0.0	40.909092	5
GGCGCGA	110	0.0	40.909092	8
GCGCGAC	105	0.0	40.714287	9
CGCGACC	105	0.0	40.714287	10
CGAACGG	50	1.0786607E-9	40.5	2
ACCCGCT	90	0.0	40.0	34
CTAGCGG	45	1.9239451E-8	40.0	2